Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G16845.1 | CDX89569 | AT2G23380.1 | 15456723 |
| AT4G16845.1 | CDY38942 | AT2G23380.1 | 15456723 |
| AT4G16845.1 | CDY07102 | AT4G02020.1 | 15456723 |
| AT4G16845.1 | CDY17381 | AT4G02020.1 | 15456723 |
| AT4G16845.1 | CDY22021 | AT4G02020.1 | 15456723 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71414 | Canola | nucleus | 92.91 | 97.76 |
| Bra021078.1-P | Field mustard | nucleus | 94.8 | 94.35 |
| CDY43476 | Canola | nucleus | 33.1 | 93.96 |
| AT4G16845.1 | Thale cress | nucleus | 67.14 | 64.55 |
| GSMUA_Achr2P11140_001 | Banana | cytosol | 13.0 | 49.55 |
| TraesCSU01G224600.1 | Wheat | nucleus | 13.48 | 45.97 |
| TraesCSU01G194400.1 | Wheat | nucleus | 13.48 | 45.97 |
| CDY35632 | Canola | cytosol | 44.21 | 41.37 |
| KRH28171 | Soybean | nucleus | 41.37 | 41.18 |
| KRH77315 | Soybean | nucleus | 41.61 | 41.12 |
| CDY42943 | Canola | nucleus | 44.44 | 40.43 |
| CDX84180 | Canola | cytosol | 16.31 | 31.51 |
| CDY00458 | Canola | cytosol | 23.88 | 29.36 |
| CDY31712 | Canola | nucleus | 24.11 | 29.23 |
| CDY33160 | Canola | nucleus | 31.21 | 28.7 |
| CDX75032 | Canola | mitochondrion, nucleus | 25.53 | 28.27 |
| TraesCS5D01G388900.1 | Wheat | nucleus | 8.51 | 28.12 |
| TraesCS4D01G183300.1 | Wheat | nucleus | 8.27 | 27.34 |
| Os09t0306800-01 | Rice | cytosol, nucleus | 38.53 | 26.9 |
| KXG37542 | Sorghum | nucleus | 37.83 | 26.62 |
| CDX84179 | Canola | cytosol | 25.53 | 26.47 |
| TraesCS2B01G023900.1 | Wheat | cytosol | 36.88 | 26.0 |
| CDX99960 | Canola | nucleus | 38.53 | 25.79 |
| TraesCS2D01G000600.1 | Wheat | cytosol | 36.64 | 25.7 |
| TraesCS2A01G000100.1 | Wheat | nucleus | 36.64 | 25.66 |
| CDY00460 | Canola | nucleus, plastid | 38.3 | 25.63 |
| OQU89244 | Sorghum | nucleus | 37.83 | 25.52 |
| HORVU2Hr1G000010.32 | Barley | nucleus | 36.41 | 25.41 |
| CDY16330 | Canola | nucleus | 37.83 | 25.32 |
| CDX91573 | Canola | nucleus | 37.12 | 24.92 |
| HORVU5Hr1G054730.1 | Barley | nucleus | 37.35 | 24.8 |
| Zm00001d034036_P003 | Maize | golgi | 35.7 | 24.79 |
| TraesCS5A01G179600.1 | Wheat | nucleus | 37.12 | 24.61 |
| TraesCS5D01G184200.2 | Wheat | nucleus | 37.12 | 24.61 |
| TraesCS5B01G177400.2 | Wheat | nucleus | 37.12 | 23.9 |
| Zm00001d020036_P002 | Maize | nucleus | 38.06 | 23.5 |
| Os04t0162100-01 | Rice | nucleus | 34.52 | 23.4 |
| HORVU2Hr1G000390.20 | Barley | nucleus | 30.26 | 19.36 |
| KXG25810 | Sorghum | nucleus | 27.66 | 19.31 |
| TraesCS2A01G002500.1 | Wheat | nucleus | 29.31 | 19.14 |
| TraesCS2B01G020400.3 | Wheat | nucleus | 28.61 | 18.85 |
| CDY38857 | Canola | nucleus | 21.28 | 12.1 |
| TraesCS3B01G073800.1 | Wheat | nucleus | 6.38 | 10.55 |
Protein Annotations
| EnsemblPlants:CDX76587 | EnsemblPlantsGene:GSBRNA2T00127033001 | InterPro:Polycomb_protein_VEFS-Box | PANTHER:PTHR22597 | PANTHER:PTHR22597:SF8 | PFAM:PF09733 |
| ProteinID:CDX76587 | ProteinID:CDX76587.1 | SEG:seg | UniParc:UPI0004EE580A | MapMan:12.3.3.1.1.3 | MapMan:15.5.15 |
Description
BnaA08g08130D
Coordinates
chrLK031807:+:2313802..2317155
Molecular Weight (calculated)
48086.6 Da
IEP (calculated)
6.289
GRAVY (calculated)
-0.522
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MCRHNCCAKS SQEEEVVSPP DENLLIYCKP VRLYNILRIR SLFNPSFLPR CLSYNIRAKG KTKSGSAGIV VFNYKDCNNT LQKTEVTENC SCPFCYMTCG
101: SFKGLQLHLN SFHDLFEFEF MLSEDDYQTV NVSVRLDAFE SEEEVNHQEK YELISFCSKP RKRRQRGGRN NARRLNVTFL PMDSPSLANG TDNGTSLLSN
201: GNHSLGYPVA TQFGMNNSSP AIAQCSLDSN AKAVLASEAV VSAAKSRKLS AERSEARSNL LLQKRQFYHS HRVQPMSLEQ VMSDRDSEDE VDDDVADLED
301: RQMLDDFVDV NKNEKRFMHL WNSFVRKQRV VADGHIPWAC EAFSKFHKEE LLHSSPLFWC WRLFMIKLWN IGLVDSATIN NCNIILENCD SNSDNKNKSA
401: DVGIDINSNA MDVDDDVNNS KAK
101: SFKGLQLHLN SFHDLFEFEF MLSEDDYQTV NVSVRLDAFE SEEEVNHQEK YELISFCSKP RKRRQRGGRN NARRLNVTFL PMDSPSLANG TDNGTSLLSN
201: GNHSLGYPVA TQFGMNNSSP AIAQCSLDSN AKAVLASEAV VSAAKSRKLS AERSEARSNL LLQKRQFYHS HRVQPMSLEQ VMSDRDSEDE VDDDVADLED
301: RQMLDDFVDV NKNEKRFMHL WNSFVRKQRV VADGHIPWAC EAFSKFHKEE LLHSSPLFWC WRLFMIKLWN IGLVDSATIN NCNIILENCD SNSDNKNKSA
401: DVGIDINSNA MDVDDDVNNS KAK
001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
Arabidopsis Description
VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.