CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89569
CDX89960
CDY07102
CDY15252
CDY17381
CDY22021
CDY32472
CDY37467
CDY38942

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35670.1	CDX89960	AT1G02580.1	15456723
AT2G35670.1	CDY15252	AT1G02580.1	15456723
AT2G35670.1	CDY32472	AT1G02580.1	15456723
AT2G35670.1	CDY37467	AT1G02580.1	15456723
AT2G35670.1	CDX89960	AT1G02580.1	16924116
AT2G35670.1	CDY15252	AT1G02580.1	16924116
AT2G35670.1	CDY32472	AT1G02580.1	16924116
AT2G35670.1	CDY37467	AT1G02580.1	16924116
AT2G35670.1	CDX89569	AT2G23380.1	15456723
AT2G35670.1	CDY38942	AT2G23380.1	15456723
AT2G35670.1	CDX89569	AT2G23380.1	16924116
AT2G35670.1	CDY38942	AT2G23380.1	16924116
AT2G35670.1	CDY07102	AT4G02020.1	15456723
AT2G35670.1	CDY17381	AT4G02020.1	15456723
AT2G35670.1	CDY22021	AT4G02020.1	15456723
AT2G35670.1	CDY07102	AT4G02020.1	16924116
AT2G35670.1	CDY17381	AT4G02020.1	16924116
AT2G35670.1	CDY22021	AT4G02020.1	16924116

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31712	Canola	nucleus	72.55	84.81
CDX75032	Canola	mitochondrion, nucleus	67.16	71.73
CDY33160	Canola	nucleus	72.06	63.91
CDX84180	Canola	cytosol	24.02	44.75
GSMUA_Achr2P11140_001	Banana	cytosol	9.07	33.33
TraesCSU01G224600.1	Wheat	nucleus	9.07	29.84
TraesCSU01G194400.1	Wheat	nucleus	9.07	29.84
CDY71414	Canola	nucleus	25.74	26.12
CDX76587	Canola	nucleus	26.47	25.53
CDY42943	Canola	nucleus	28.43	24.95
CDY35632	Canola	cytosol	26.72	24.11
CDY43476	Canola	nucleus	7.35	20.13
KRH77315	Soybean	nucleus	19.61	18.69
KRH28171	Soybean	nucleus	19.36	18.59
CDY00458	Canola	cytosol	13.73	16.28
AT2G35670.1	Thale cress	nucleus	25.0	13.51
KXG37542	Sorghum	nucleus	19.36	13.14
Os09t0306800-01	Rice	cytosol, nucleus	19.12	12.87
TraesCS2B01G023900.1	Wheat	cytosol	18.38	12.5
OQU89244	Sorghum	nucleus	18.87	12.28
TraesCS2D01G000600.1	Wheat	cytosol	18.14	12.27
TraesCS2A01G000100.1	Wheat	nucleus	18.14	12.25
HORVU5Hr1G054730.1	Barley	nucleus	19.12	12.24
HORVU2Hr1G000010.32	Barley	nucleus	18.14	12.21
TraesCS5D01G184200.2	Wheat	nucleus	18.87	12.07
TraesCS5A01G179600.1	Wheat	nucleus	18.87	12.07
CDX99960	Canola	nucleus	18.63	12.03
Zm00001d034036_P003	Maize	golgi	17.89	11.99
CDY00460	Canola	nucleus, plastid	18.38	11.87
TraesCS5B01G177400.2	Wheat	nucleus	18.87	11.72
Os04t0162100-01	Rice	nucleus	17.89	11.7
CDY16330	Canola	nucleus	17.89	11.55
CDX91573	Canola	nucleus	17.65	11.43
Zm00001d020036_P002	Maize	nucleus	19.12	11.39
TraesCS2A01G002500.1	Wheat	nucleus	17.4	10.96
TraesCS4D01G183300.1	Wheat	nucleus	3.43	10.94
TraesCS2B01G020400.3	Wheat	nucleus	17.16	10.9
HORVU2Hr1G000390.20	Barley	nucleus	17.65	10.89
KXG25810	Sorghum	nucleus	16.18	10.89
TraesCS5D01G388900.1	Wheat	nucleus	3.19	10.16
CDY38857	Canola	nucleus	12.01	6.59
TraesCS3B01G073800.1	Wheat	nucleus	2.94	4.69

Protein Annotations

EnsemblPlants:CDX84179	EnsemblPlantsGene:GSBRNA2T00141222001	InterPro:Polycomb_protein_VEFS-Box	PANTHER:PTHR22597	PANTHER:PTHR22597:SF8	PFAM:PF09733
ProteinID:CDX84179	ProteinID:CDX84179.1	SEG:seg	UniParc:UPI0004EF1E84	MapMan:12.3.3.1.1.3	MapMan:15.5.15

Description

BnaC04g09410D

Coordinates

chrLK031836:-:534034..536714

Molecular Weight (calculated)

45735.0 Da

IEP (calculated)

7.582

GRAVY (calculated)

-0.648

Length

408 amino acids

Sequence
(BLAST)

001: MAGVRPLTEE EKELMSLYGK PITVYDILQA FSQDKGVKHH LMSSHALFDF NFRLSENGHP NFDVSVKPDA FTNGVLTYDL EEHNRVNIYL YRSKSRMRGQ
101: RAGPKGRKCC KIFEKYSEDV PRDKANEISH VNGDNIPSSL ARTRLSGQTS DIQTITQPEI GQSSKAKGPR AIGRKRLNPQ RVGAERTDLL RSRQFYHSKT
201: LQPMTLEEVL SDADSDNEDD QEFKDFQERM KIDRLVDASD EEKRFMWLWN TFIRKQRVYA DKHVPWACEE FVKVHAKELI TPKLLWQWRM FAIDTLCLKY
301: GLICAKTMDK CSIILQKTQE AEEAPEEAAA AAEVAAAAEA EAAVAAAVAA AAAAKVAADA AAAKASAAQG TRKSARTQKK KKQEAAATSK ANANGNEPQP
401: MELDEEEH

Best Arabidopsis Sequence Match ( AT2G35670.1 )
(BLAST)

001: MARKSIRGKE VVMVSDDDDD DDDDVDDDKN IIKCVKPLTV YKNLETPTDS DDNDDDDDDD VDVDENIIKY IKPVAVYKKL ETRSKNNPYF LRRSLKYIIQ
101: AKKKKKSNSG GKIRFNYRDV SNKMTLKAEV VENFSCPFCL IPCGGHEGLQ LHLKSSHDAF KFEFYRAEKD HGPEVDVSVK SDTIKFGVLK DDVGNPQLSP
201: LTFCSKNRNQ RRQRDDSNNV KKLNVLLMEL DLDDLPRGTE NDSTHVNDDN VSSPPRAHSS EKISDILTTT QLAIAESSEP KVPHVNDGNV SSPPRAHSSA
301: EKNESTHVND DDDVSSPPRA HSLEKNESTH VNEDNISSPP KAHSSKKNES THMNDEDVSF PPRTRSSKET SDILTTTQPA IVEPSEPKVR RVSRRKQLYA
401: KRYKARETQP AIAESSEPKV LHVNDENVSS PPEAHSLEKA SDILTTTQPA IAESSEPKVP HVNDENVSST PRAHSSKKNK STRKNVDNVP SPPKTRSSKK
501: TSDILTTTQP TIAESSEPKV RHVNDDNVSS TPRAHSSKKN KSTRKNDDNI PSPPKTRSSK KTSNILATTQ PAKAEPSEPK VTRVSRRKEL HAERCEAKRL
601: ERLKGRQFYH SQTMQPITFE QVMSNEDSEN ETDDYALDIS ERLRLERLVG VSKEEKRYMY LWNIFVRKQR VIADGHVPWA CEEFAKLHKE EMKNSSSFDW
701: WWRMFRIKLW NNGLICAKTF HKCTTILLSN SDEAGQFTSG SAANANNQQS MEVDE

Arabidopsis Description

FIS2Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2 [Source:UniProtKB/Swiss-Prot;Acc:P0DKJ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.