CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85476
CDX88663
CDX89569
CDX89931
CDY02736
CDY02805
CDY07102
CDY15444
CDY17381
CDY18131
CDY22021
CDY27567
CDY32715
CDY38942
CDY43875
CDY53612
CDY58569
CDY62688

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51230.1	CDX89931	AT1G02930.1	23778966
AT5G51230.1	CDY15444	AT1G02930.1	23778966
AT5G51230.1	CDY18131	AT1G02930.1	23778966
AT5G51230.1	CDX85476	AT1G30530.1	23778966
AT5G51230.1	CDY02736	AT1G30530.1	23778966
AT5G51230.1	CDX89569	AT2G23380.1	15456723
AT5G51230.1	CDY38942	AT2G23380.1	15456723
AT5G51230.1	CDY27567	AT3G20740.1	23778966
AT5G51230.1	CDY53612	AT3G20740.1	23778966
AT5G51230.1	CDY07102	AT4G02020.1	15456723
AT5G51230.1	CDY17381	AT4G02020.1	15456723
AT5G51230.1	CDY22021	AT4G02020.1	15456723
AT5G51230.1	CDY07102	AT4G02020.1	23778966
AT5G51230.1	CDY17381	AT4G02020.1	23778966
AT5G51230.1	CDY22021	AT4G02020.1	23778966
AT5G51230.1	CDX88663	AT5G58230.1	23778966
AT5G51230.1	CDY02805	AT5G58230.1	23778966
AT5G51230.1	CDY32715	AT5G58230.1	23778966
AT5G51230.1	CDY43875	AT5G58230.1	23778966
AT5G51230.1	CDY58569	AT5G58230.1	23778966
AT5G51230.1	CDY62688	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015200.1-P	Field mustard	nucleus, plastid	100.0	100.0
CDX99960	Canola	nucleus	95.73	95.73
AT5G51230.1	Thale cress	nucleus	89.56	89.7
CDX91573	Canola	nucleus	81.8	82.06
CDY16330	Canola	nucleus	81.8	81.8
TraesCSU01G224600.1	Wheat	nucleus	13.92	70.97
TraesCSU01G194400.1	Wheat	nucleus	13.92	70.97
GSMUA_Achr2P11140_001	Banana	cytosol	11.39	64.86
VIT_16s0013g00860.t01	Wine grape	nucleus	63.61	60.73
Solyc03g093640.2.1	Tomato	nucleus	59.18	58.62
CDY00458	Canola	cytosol	30.7	56.4
KRH33365	Soybean	nucleus	54.11	56.25
KRG90126	Soybean	nucleus	53.32	55.43
Os09t0306800-01	Rice	cytosol, nucleus	47.63	49.67
CDY43476	Canola	nucleus	11.71	49.66
KXG37542	Sorghum	nucleus	47.15	49.58
TraesCS2B01G023900.1	Wheat	cytosol	45.73	48.17
HORVU5Hr1G054730.1	Barley	nucleus	48.42	48.04
TraesCS2A01G000100.1	Wheat	nucleus	45.73	47.85
OQU89244	Sorghum	nucleus	47.47	47.85
TraesCS5A01G179600.1	Wheat	nucleus	48.26	47.81
TraesCS5D01G184200.2	Wheat	nucleus	48.26	47.81
TraesCS2D01G000600.1	Wheat	cytosol	45.57	47.76
HORVU2Hr1G000010.32	Barley	nucleus	45.41	47.36
TraesCS5B01G177400.2	Wheat	nucleus	48.1	46.27
Zm00001d034036_P003	Maize	golgi	44.3	45.98
Zm00001d020036_P002	Maize	nucleus	47.15	43.5
Os04t0162100-01	Rice	nucleus	40.82	41.35
CDY71414	Canola	nucleus	25.95	40.8
TraesCS2A01G002500.1	Wheat	nucleus	41.61	40.59
TraesCS2B01G020400.3	Wheat	nucleus	40.98	40.34
KXG25810	Sorghum	nucleus	36.87	38.45
HORVU2Hr1G000390.20	Barley	nucleus	40.19	38.43
CDX76587	Canola	nucleus	25.63	38.3
TraesCS3B01G073800.1	Wheat	nucleus	14.72	36.33
TraesCS4D01G183300.1	Wheat	nucleus	7.12	35.16
TraesCS5D01G388900.1	Wheat	nucleus	6.8	33.59
CDY38857	Canola	nucleus	38.45	32.66
CDX84180	Canola	cytosol	9.34	26.94
CDY42943	Canola	nucleus	18.35	24.95
KRH34601	Soybean	nucleus	30.06	24.23
CDY35632	Canola	cytosol	16.93	23.67
CDY31712	Canola	nucleus	11.87	21.49
CDY33160	Canola	nucleus	15.51	21.3
CDX75032	Canola	mitochondrion, nucleus	12.18	20.16
CDX84179	Canola	cytosol	11.87	18.38

Protein Annotations

EnsemblPlants:CDY00460	EnsemblPlantsGene:GSBRNA2T00110147001	InterPro:Polycomb_protein_VEFS-Box	PANTHER:PTHR22597	PANTHER:PTHR22597:SF0	PFAM:PF09733
ProteinID:CDY00460	ProteinID:CDY00460.1	SEG:seg	UniParc:UPI0002544660	MapMan:12.3.3.1.1.3	MapMan:15.5.15

Description

BnaA10g08130D

Coordinates

chrLK031919:-:240411..245655

Molecular Weight (calculated)

71597.8 Da

IEP (calculated)

7.986

GRAVY (calculated)

-0.336

Length

632 amino acids

Sequence
(BLAST)

001: MPGIPLVSPA ASSCSRSTDS MCHEDSRVLM SEEEEIAAEE SLVAYCKPVE LYNILQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG TIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYKFSRAC ILTGVVGVDG VSQAQANFLL PDMNKLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: VSLQSLYSLW QKSPNMDLGQ KVDSVSLVEM QPCFIKLKSM NEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGATEKSPY SSFSYDDISS PSMLQIIRLR
301: TRNVVFNYRY YNNKLQRTEV TEDFSCPFCL VKCASLKGLK YHLPSTHDLF NFEFWVSEEY QAVNVSLKSE TMISEINEDG VDPKQQTFFF SSKKGRRRRQ
401: KSQVRSSRQG HHLGLGCQVL DKTDDAHSVR CEKNRIAPGK HCERIGVAES SGQRVPPGTS PADVQSCVDP DSVQSMVGST MLQFAKTRKL SIERSELRNR
501: SLLQKREFFH SHRAQPMALE QVLSDRDSED EVDDDVADFE DRRMLDDFVD VTKDEKQMMH MWNSFVRKQR VLADGHIPWA CEAFSRLHGS IMVRIPHLIW
601: CWRMFMVKLW NHGLLDARTM NNCNVFLEQL PN

Best Arabidopsis Sequence Match ( AT5G51230.1 )
(BLAST)

001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I

Arabidopsis Description

EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.