Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62688 | Canola | nucleus | 96.01 | 96.01 |
| AT5G58230.1 | Thale cress | nucleus | 85.92 | 86.32 |
| VIT_16s0013g01550.t01 | Wine grape | nucleus | 83.1 | 83.49 |
| CDY02805 | Canola | nucleus | 80.99 | 82.34 |
| PGSC0003DMT400061016 | Potato | cytosol | 81.92 | 82.31 |
| Solyc01g104510.2.1 | Tomato | nucleus | 81.46 | 81.84 |
| KRH42369 | Soybean | nucleus | 80.52 | 80.71 |
| KRH58491 | Soybean | nucleus | 80.05 | 80.24 |
| GSMUA_Achr4P31680_001 | Banana | nucleus | 79.11 | 79.67 |
| Zm00001d033252_P001 | Maize | cytosol, nucleus, plastid | 21.83 | 79.49 |
| TraesCS5D01G385600.1 | Wheat | nucleus | 78.64 | 78.27 |
| TraesCS5B01G378700.1 | Wheat | nucleus | 78.4 | 78.04 |
| Os03t0640100-01 | Rice | cytosol | 78.4 | 78.04 |
| TraesCSU01G072700.1 | Wheat | nucleus | 78.17 | 77.8 |
| Zm00001d033247_P001 | Maize | nucleus | 78.64 | 77.73 |
| Zm00001d033248_P002 | Maize | cytoskeleton, cytosol, nucleus | 78.64 | 77.73 |
| CDY32715 | Canola | nucleus | 75.59 | 77.4 |
| TraesCS5D01G385800.1 | Wheat | cytosol | 40.14 | 76.68 |
| Zm00001d013702_P001 | Maize | nucleus | 76.29 | 75.41 |
| GSMUA_Achr5P02390_001 | Banana | cytosol | 69.01 | 70.0 |
| CDX88663 | Canola | nucleus | 86.85 | 58.18 |
| CDY58569 | Canola | cytosol | 86.85 | 58.18 |
| OQU91278 | Sorghum | cytosol, nucleus, plastid | 78.64 | 55.1 |
| CDY26787 | Canola | cytosol | 52.35 | 53.86 |
| CDY47479 | Canola | cytosol | 52.35 | 53.86 |
| CDY70131 | Canola | cytosol | 23.94 | 48.8 |
| CDX81933 | Canola | nucleus | 33.1 | 29.13 |
| CDY29763 | Canola | endoplasmic reticulum | 22.54 | 28.49 |
| CDY43523 | Canola | nucleus | 31.46 | 28.21 |
| CDY21661 | Canola | nucleus | 33.33 | 28.06 |
| CDY70287 | Canola | nucleus | 11.97 | 27.87 |
| CDY06779 | Canola | nucleus | 31.69 | 27.84 |
| CDY48711 | Canola | nucleus | 32.63 | 27.63 |
| CDY03358 | Canola | nucleus | 32.63 | 27.58 |
| CDY35867 | Canola | cytosol | 17.14 | 25.7 |
| CDX82696 | Canola | nucleus | 25.59 | 24.77 |
| CDX99799 | Canola | cytosol | 16.43 | 22.08 |
| CDY50786 | Canola | cytosol | 16.2 | 21.77 |
| CDX90175 | Canola | cytosol | 16.2 | 21.77 |
| CDY48712 | Canola | plastid | 23.94 | 21.66 |
| CDY03357 | Canola | plastid | 23.94 | 21.56 |
| CDY43325 | Canola | cytosol | 15.96 | 21.45 |
| CDY21659 | Canola | nucleus | 23.71 | 21.35 |
| CDX81935 | Canola | nucleus | 23.47 | 21.05 |
| CDY35872 | Canola | cytosol, nucleus, plastid | 16.67 | 20.88 |
| CDX82701 | Canola | nucleus | 18.31 | 20.1 |
Protein Annotations
| MapMan:12.2.1.3 | MapMan:12.3.3.1.1.1 | Gene3D:2.130.10.10 | GO:A0A078HZ42 | UniProt:A0A078HZ42 | EnsemblPlants:CDY43875 |
| ProteinID:CDY43875 | ProteinID:CDY43875.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00077435001 | InterPro:Histone-bd_RBBP4_N |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF12265 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF82 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI0004EEEE57 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
BnaC09g33680DBnaC09g33680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZ42]
Coordinates
chrLK032571:-:171991..173861
Molecular Weight (calculated)
48150.1 Da
IEP (calculated)
4.411
GRAVY (calculated)
-0.507
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKDDVEMRG EAEERIINED YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PSREEPPGQN YSVQKMILGT HTCENEPNYL MIAQVQLPLE DTESEARQYD
101: DDRSEFGGFG CASGKVQVIQ QIVHEGEVNR ARYMPQNPFM IATKTVSAEV YLFDYSKHPS KPALDGACNP DMRLKGHSSE GYGLSWSTFK EGHLLSGSDD
201: AQICLWDVCA TPKSNLLDAQ QIFKAHEGVV EDVAWHMKHA HLFGSVGDDQ YLHIWDLRSP SPSRPVKSVE AHSMEVNCLA FNPVNEWIVA TGSTDKTVKL
301: FDLRMLNSAL HTFDSHKEEV FQVGWNPNNE TILASCCLGR RLMVWDVSRI NDEQTAEDAE DGPPELLFIH GGHTSKVSDF SWNPCEDWVI SSVSEDNILQ
401: IWQMAENIYH DEDDGPGTVE EPTNGS
101: DDRSEFGGFG CASGKVQVIQ QIVHEGEVNR ARYMPQNPFM IATKTVSAEV YLFDYSKHPS KPALDGACNP DMRLKGHSSE GYGLSWSTFK EGHLLSGSDD
201: AQICLWDVCA TPKSNLLDAQ QIFKAHEGVV EDVAWHMKHA HLFGSVGDDQ YLHIWDLRSP SPSRPVKSVE AHSMEVNCLA FNPVNEWIVA TGSTDKTVKL
301: FDLRMLNSAL HTFDSHKEEV FQVGWNPNNE TILASCCLGR RLMVWDVSRI NDEQTAEDAE DGPPELLFIH GGHTSKVSDF SWNPCEDWVI SSVSEDNILQ
401: IWQMAENIYH DEDDGPGTVE EPTNGS
001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
Arabidopsis Description
MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.