CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82264	Canola	cytosol	99.82	99.82
Bra001773.1-P	Field mustard	cytosol	99.82	99.63
CDY25374	Canola	cytosol	97.25	97.25
CDY42227	Canola	cytosol	97.06	97.06
CDY24564	Canola	cytosol	96.88	96.88
AT3G20050.1	Thale cress	cytosol	96.33	96.33
CDY33444	Canola	cytosol	97.06	93.96
VIT_15s0021g02230.t01	Wine grape	cytosol	88.81	88.64
KRH59103	Soybean	nucleus	88.26	88.26
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	88.07	88.07
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	86.24	86.24
GSMUA_Achr11P...	Banana	cytosol	86.97	85.87
Solyc01g090750.2.1	Tomato	nucleus	85.5	85.5
PGSC0003DMT400066954	Potato	cytosol	85.5	85.5
Zm00001d052056_P005	Maize	plasma membrane	84.59	84.59
Zm00001d018349_P001	Maize	cytosol	84.22	84.22
EES05938	Sorghum	cytosol	84.04	84.04
TraesCS1D01G208500.1	Wheat	cytosol	76.7	83.94
TraesCS1A01G205200.1	Wheat	cytosol	83.67	83.67
TraesCS7B01G124100.1	Wheat	cytosol, golgi, unclear	83.67	83.67
HORVU1Hr1G052730.26	Barley	cytosol	59.45	83.51
TraesCS7A01G217200.1	Wheat	cytosol	83.3	83.3
TraesCS7D01G056800.1	Wheat	cytosol	82.94	82.94
TraesCS7A01G062100.1	Wheat	cytosol	82.94	82.94
TraesCS4A01G427500.1	Wheat	cytosol, unclear	82.94	82.94
TraesCS1B01G218800.1	Wheat	cytosol	71.74	82.84
TraesCS7D01G218500.2	Wheat	cytosol	83.49	79.68
GSMUA_Achr2P01090_001	Banana	cytosol	50.46	76.18
HORVU7Hr1G044070.2	Barley	cytosol	79.27	75.66
CDY11302	Canola	cytosol	10.28	43.75
CDY43747	Canola	cytosol	10.28	43.75
CDY72106	Canola	cytosol	16.15	41.51
CDY72126	Canola	cytosol	15.96	41.04
CDX70950	Canola	cytosol	33.95	35.1
CDX92428	Canola	cytosol	33.76	34.91
CDY16573	Canola	cytosol	33.76	34.91
CDY47913	Canola	cytosol	16.7	34.87
CDY09085	Canola	cytosol	33.39	34.54
CDY08491	Canola	cytosol	31.38	33.93
CDY01062	Canola	cytosol	31.38	33.93
CDX92212	Canola	cytosol, plastid	33.03	33.77
CDY24438	Canola	cytosol, plastid	33.03	33.77
CDX95541	Canola	cytosol, plastid	33.03	33.71
CDY53919	Canola	cytosol	31.56	33.66
CDX73850	Canola	cytosol	31.56	33.53
CDY18509	Canola	cytosol	32.66	33.52
CDY67306	Canola	cytosol	20.0	32.25
CDY03881	Canola	cytosol	31.19	31.78
CDX84951	Canola	cytosol	31.19	31.78
CDY51593	Canola	cytosol	31.19	31.72
CDY54836	Canola	cytosol	31.01	31.59
CDY36138	Canola	cytosol	31.01	31.59
CDY71043	Canola	cytosol	17.43	30.16
CDX74120	Canola	cytosol	29.54	29.01
CDY18835	Canola	cytosol	29.17	28.65
CDY49990	Canola	cytosol	29.36	28.27
CDY21153	Canola	cytosol	27.89	27.94
CDY29973	Canola	cytosol	27.71	27.76
CDX74202	Canola	cytosol, plasma membrane	27.89	27.74
CDX92056	Canola	cytosol	27.89	27.74
CDY50868	Canola	cytosol	27.34	27.39
CDY42892	Canola	cytosol	27.34	27.39
CDY51544	Canola	cytosol	26.42	26.92
CDY28697	Canola	cytosol	26.42	26.92
CDY26490	Canola	cytosol	26.05	26.49
CDX69477	Canola	cytosol	26.05	26.49
CDX78670	Canola	cytosol	25.87	26.36
CDX70671	Canola	cytosol	25.87	26.36
CDY50320	Canola	cytosol	12.11	25.0
CDX79329	Canola	cytosol	12.11	25.0
CDX88835	Canola	mitochondrion	33.58	24.08

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	GO:A0A078HGT3	UniProt:A0A078HGT3
EnsemblPlants:CDY36063	ProteinID:CDY36063	ProteinID:CDY36063.1	InterPro:Chap_CCT_alpha	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00059891001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751
ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF177	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02340	UniParc:UPI0004EF3347	SEG:seg	:	:

Description

BnaC03g41350DBnaC03g41350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HGT3]

Coordinates

chrLK032366:+:281270..285140

Molecular Weight (calculated)

59108.8 Da

IEP (calculated)

6.373

GRAVY (calculated)

-0.042

Length

545 amino acids

Sequence
(BLAST)

001: MSISAQNPDI SGDRQSGQDV RTQNVVACQA ISNIVKTSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE ACKYIDEKLV TKVEKLGRVP LINCAKTSMS SKLISGDSDF FANLVVDAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLKGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKDDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA DDDVVLIKGT KTSSAVSLIL RGANDYMLDE MERALHDSLC
401: IVKRTLESNA VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFAEALLV IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHFSSMG LDLVNGIVRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKED GQGDE

Best Arabidopsis Sequence Match ( AT3G11830.1 )
(BLAST)

001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR

Arabidopsis Description

CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.