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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra001773.1-P Field mustard cytosol 100.0 99.82
CDY36063 Canola cytosol 99.82 99.82
CDY25374 Canola cytosol 97.43 97.43
CDY42227 Canola cytosol 97.25 97.25
CDY24564 Canola cytosol 97.06 97.06
AT3G20050.1 Thale cress cytosol 96.51 96.51
CDY33444 Canola cytosol 97.25 94.14
VIT_15s0021g02230.t01 Wine grape cytosol 88.81 88.64
KRH59103 Soybean nucleus 88.26 88.26
KRH42973 Soybean cytosol, endoplasmic reticulum, nucleus 88.07 88.07
Os04t0551800-01 Rice cytosol, golgi, nucleus, plasma membrane, plastid 86.06 86.06
GSMUA_Achr11P... Banana cytosol 86.97 85.87
Solyc01g090750.2.1 Tomato nucleus 85.5 85.5
PGSC0003DMT400066954 Potato cytosol 85.5 85.5
Zm00001d052056_P005 Maize plasma membrane 84.77 84.77
Zm00001d018349_P001 Maize cytosol 84.4 84.4
EES05938 Sorghum cytosol 84.22 84.22
TraesCS1D01G208500.1 Wheat cytosol 76.88 84.14
TraesCS1A01G205200.1 Wheat cytosol 83.85 83.85
HORVU1Hr1G052730.26 Barley cytosol 59.63 83.76
TraesCS7B01G124100.1 Wheat cytosol, golgi, unclear 83.67 83.67
TraesCS7A01G217200.1 Wheat cytosol 83.3 83.3
TraesCS4A01G427500.1 Wheat cytosol, unclear 82.94 82.94
TraesCS7D01G056800.1 Wheat cytosol 82.94 82.94
TraesCS7A01G062100.1 Wheat cytosol 82.94 82.94
TraesCS1B01G218800.1 Wheat cytosol 71.74 82.84
TraesCS7D01G218500.2 Wheat cytosol 83.49 79.68
GSMUA_Achr2P01090_001 Banana cytosol 50.46 76.18
HORVU7Hr1G044070.2 Barley cytosol 79.27 75.66
CDY11302 Canola cytosol 10.28 43.75
CDY43747 Canola cytosol 10.28 43.75
CDY72106 Canola cytosol 16.15 41.51
CDY72126 Canola cytosol 15.96 41.04
CDX70950 Canola cytosol 33.95 35.1
CDX92428 Canola cytosol 33.76 34.91
CDY16573 Canola cytosol 33.76 34.91
CDY47913 Canola cytosol 16.7 34.87
CDY09085 Canola cytosol 33.39 34.54
CDY01062 Canola cytosol 31.38 33.93
CDY08491 Canola cytosol 31.38 33.93
CDX92212 Canola cytosol, plastid 33.03 33.77
CDY24438 Canola cytosol, plastid 33.03 33.77
CDX95541 Canola cytosol, plastid 33.03 33.71
CDY53919 Canola cytosol 31.56 33.66
CDX73850 Canola cytosol 31.56 33.53
CDY18509 Canola cytosol 32.66 33.52
CDY67306 Canola cytosol 20.0 32.25
CDY03881 Canola cytosol 31.19 31.78
CDX84951 Canola cytosol 31.19 31.78
CDY51593 Canola cytosol 31.19 31.72
CDY54836 Canola cytosol 31.01 31.59
CDY36138 Canola cytosol 31.01 31.59
CDY71043 Canola cytosol 17.43 30.16
CDX74120 Canola cytosol 29.54 29.01
CDY18835 Canola cytosol 29.17 28.65
CDY49990 Canola cytosol 29.36 28.27
CDY21153 Canola cytosol 27.89 27.94
CDY29973 Canola cytosol 27.71 27.76
CDX74202 Canola cytosol, plasma membrane 27.89 27.74
CDX92056 Canola cytosol 27.89 27.74
CDY50868 Canola cytosol 27.34 27.39
CDY42892 Canola cytosol 27.34 27.39
CDY51544 Canola cytosol 26.42 26.92
CDY28697 Canola cytosol 26.42 26.92
CDY26490 Canola cytosol 26.05 26.49
CDX69477 Canola cytosol 26.05 26.49
CDX78670 Canola cytosol 25.87 26.36
CDX70671 Canola cytosol 25.87 26.36
CDY50320 Canola cytosol 12.11 25.0
CDX79329 Canola cytosol 12.11 25.0
CDX88835 Canola mitochondrion 33.58 24.08
Protein Annotations
Gene3D:1.10.560.10MapMan:20.3.1.1Gene3D:3.30.260.10Gene3D:3.50.7.10GO:A0A078D1Z6EnsemblPlants:CDX82264
ProteinID:CDX82264ProteinID:CDX82264.1InterPro:Chap_CCT_alphaInterPro:Chaperone_TCP-1InterPro:Chaperonin_TCP-1_CSInterPro:Cpn60/TCP-1
GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0006457
GO:GO:0008150GO:GO:0009987GO:GO:0051082InterPro:GROEL-like_equatorial_sfEnsemblPlantsGene:GSBRNA2T00137366001InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409InterPro:IPR027410InterPro:IPR027413PFAM:PF00118PRINTS:PR00304ScanProsite:PS00750
ScanProsite:PS00751ScanProsite:PS00995PANTHER:PTHR11353PANTHER:PTHR11353:SF177SUPFAM:SSF48592SUPFAM:SSF52029
SUPFAM:SSF54849InterPro:TCP-1-like_intermed_sfTIGRFAMs:TIGR02340UniParc:UPI0004EE1323SEG:seg:
Description
BnaA03g35570D
Coordinates
chrLK031828:+:302124..305906
Molecular Weight (calculated)
59124.8 Da
IEP (calculated)
6.373
GRAVY (calculated)
-0.050
Length
545 amino acids
Sequence
(BLAST)
001: MSISAQNPDI SGDRQSGQDV RTQNVVACQA ISNIVKTSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE ACKYIDEKLV TKVEKLGRVP LINCAKTSMS SKLISGDSDF FANLVVDAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLKGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKDDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA DDDVVLIKGT KTSSAVSLIL RGANDYMLDE MERALHDSLC
401: IVKRTLESNA VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFAEALLV IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHYSSMG LDLVNGIVRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKED GQGDE
Best Arabidopsis Sequence Match ( AT3G20050.1 )
(BLAST)
001: MSISAQNPDI SGDRQSGQDV RTQNVMACQA VSNIVKTSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE SCKYIEEKLV TKVEKLGKVP LINCAKTSMS SKLISGDSDF FANLVVEAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLNGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKEDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA DDDVILIKGT KTSSAVSLIL RGANDYMLDE MERALHDALC
401: IVKRTLESNT VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFADALLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHYSSMG LDLVNGTIRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKDE SQGEE
Arabidopsis Description
CCT1T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P28769]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.