CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001174.1-P	Field mustard	cytosol	97.88	99.82
CDX74120	Canola	cytosol	97.88	99.82
CDY18835	Canola	cytosol	97.0	98.92
AT5G26360.1	Thale cress	cytosol	94.35	96.22
VIT_07s0130g00410.t01	Wine grape	cytosol	91.87	93.36
GSMUA_Achr6P23290_001	Banana	cytosol	89.05	90.48
VIT_17s0000g08170.t01	Wine grape	cytosol	88.52	89.95
PGSC0003DMT400060294	Potato	cytosol	87.1	88.83
GSMUA_Achr5P09040_001	Banana	cytosol	87.28	88.69
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	86.75	88.63
KRH38791	Soybean	cytosol	86.57	88.45
Solyc05g056310.2.1	Tomato	extracellular, plastid	86.75	88.15
KRG92501	Soybean	cytosol	85.87	87.25
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	85.87	87.1
EER92655	Sorghum	cytosol	85.87	87.1
Zm00001d028183_P002	Maize	cytosol	85.51	86.74
Os02t0247200-01	Rice	cytosol	84.81	85.87
TraesCS7A01G346200.1	Wheat	cytosol	84.45	85.66
HORVU7Hr1G080310.1	Barley	cytosol	84.1	85.3
TraesCS7B01G237000.1	Wheat	cytosol	84.28	84.42
TraesCS7D01G332900.1	Wheat	cytosol	83.92	84.07
Zm00001d053553_P002	Maize	cytosol	85.16	73.93
CDY72126	Canola	cytosol	13.43	35.85
CDY72106	Canola	cytosol	13.25	35.38
CDY11302	Canola	cytosol	7.24	32.03
CDY43747	Canola	cytosol	7.24	32.03
CDY54836	Canola	cytosol	29.86	31.59
CDY36138	Canola	cytosol	29.86	31.59
CDY01062	Canola	cytosol	28.09	31.55
CDY08491	Canola	cytosol	27.92	31.35
CDY51593	Canola	cytosol	29.68	31.34
CDY03881	Canola	cytosol	29.51	31.21
CDX84951	Canola	cytosol	29.33	31.03
CDX73850	Canola	cytosol	27.92	30.8
CDY53919	Canola	cytosol	27.74	30.72
CDX92212	Canola	cytosol, plastid	28.62	30.39
CDY24438	Canola	cytosol, plastid	28.62	30.39
CDX95541	Canola	cytosol, plastid	28.62	30.34
CDY18509	Canola	cytosol	28.45	30.32
CDY24564	Canola	cytosol	28.8	29.91
CDY47913	Canola	cytosol	13.78	29.89
CDY42227	Canola	cytosol	28.62	29.72
CDY25374	Canola	cytosol	28.45	29.54
CDY09085	Canola	cytosol	27.39	29.41
CDX82264	Canola	cytosol	28.27	29.36
CDY36063	Canola	cytosol	28.27	29.36
CDX70950	Canola	cytosol	27.21	29.22
CDX92428	Canola	cytosol	27.21	29.22
CDY16573	Canola	cytosol	27.21	29.22
CDY33444	Canola	cytosol	28.27	28.42
CDY21153	Canola	cytosol	26.33	27.39
CDX79329	Canola	cytosol	12.72	27.27
CDY50320	Canola	cytosol	12.72	27.27
CDY67306	Canola	cytosol	16.25	27.22
CDY29973	Canola	cytosol	26.15	27.21
CDX74202	Canola	cytosol, plasma membrane	26.33	27.19
CDX92056	Canola	cytosol	26.33	27.19
CDY42892	Canola	cytosol	25.44	26.47
CDY50868	Canola	cytosol	25.27	26.29
CDY71043	Canola	cytosol	13.78	24.76
CDX78670	Canola	cytosol	23.32	24.67
CDX70671	Canola	cytosol	23.32	24.67
CDX69477	Canola	cytosol	23.14	24.44
CDY28697	Canola	cytosol	22.97	24.3
CDY51544	Canola	cytosol	22.97	24.3
CDY26490	Canola	cytosol	22.97	24.25
CDX88835	Canola	mitochondrion	27.21	20.26

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.3	Gene3D:3.30.260.10	Gene3D:3.50.7.10	GO:A0A078IGE0	UniProt:A0A078IGE0
EnsemblPlants:CDY49990	ProteinID:CDY49990	ProteinID:CDY49990.1	InterPro:Chap_CCT_gamma	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00094191001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751
ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF24	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02344	UniParc:UPI0004EE26A4	:	:	:

Description

BnaC03g34470DT-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A078IGE0]

Coordinates

chrLK032873:+:49141..52448

Molecular Weight (calculated)

61539.5 Da

IEP (calculated)

6.223

GRAVY (calculated)

-0.117

Length

566 amino acids

Sequence
(BLAST)

001: MNAPVLVLKD SLKRESGTKV HHGNIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNAILRELDV AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF IEKSYHPTVI CRAYNKALED AIAVLDKIAM SIDVNDRATV LGLVKSCIGT KFTSQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQLED SKVLKGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILRFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDVGTGAGLF EVKKIGDDFF AFVVDCKEPK ACTVLLRGPS KDLLNEVERN LQDAMSVSRN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKARINKL
501: NFFFLIWDAY NVKAQTFKTA IEAACMLLRI DDIVSGIKKK QAPGAGPSKP TIETEGDADN EQILPD

Best Arabidopsis Sequence Match ( AT5G26360.1 )
(BLAST)

001: MHAPVLVLSD SLKRESGSKV HHGNIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNAILRELDV AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF LEKNYHPTVI CRAYIKALED SIAVLDKIAM SIDINDRSQV LGLVKSCIGT KFTSQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQFED SEVLKGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILKFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDIGTGAGLF EVKKIGDDFF SFIVDCKEPK ACTVLLRGPS KDFINEVERN LQDAMSVARN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKIWDSYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGSGPSKPT IETEGDADNE QILPD

Arabidopsis Description

CCT3T-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A178UHF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.