Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11302 | Canola | cytosol | 35.5 | 93.75 |
| CDY43747 | Canola | cytosol | 35.5 | 93.75 |
| CDY47913 | Canola | cytosol | 53.55 | 69.35 |
| CDY53919 | Canola | cytosol | 96.75 | 63.99 |
| CDX73850 | Canola | cytosol | 97.04 | 63.94 |
| CDY08491 | Canola | cytosol | 94.67 | 63.49 |
| CDY01062 | Canola | cytosol | 94.38 | 63.29 |
| Bra038682.1-P | Field mustard | cytosol | 97.34 | 59.28 |
| GSMUA_Achr2P21510_001 | Banana | cytosol | 88.76 | 58.48 |
| AT3G11830.1 | Thale cress | cytosol | 96.15 | 58.35 |
| Solyc06g065520.2.1 | Tomato | nucleus, plastid | 89.35 | 54.12 |
| PGSC0003DMT400067201 | Potato | cytosol | 89.05 | 53.94 |
| KRH14704 | Soybean | cytosol, endoplasmic reticulum, nucleus | 89.05 | 53.75 |
| VIT_00s0670g00010.t01 | Wine grape | cytosol | 89.05 | 53.56 |
| EES04545 | Sorghum | cytosol | 88.46 | 53.39 |
| KRH73433 | Soybean | endoplasmic reticulum, nucleus | 88.46 | 53.39 |
| Zm00001d053857_P002 | Maize | cytosol | 87.87 | 53.04 |
| TraesCS6A01G131400.1 | Wheat | cytosol, golgi, mitochondrion, unclear | 86.98 | 52.78 |
| TraesCS6D01G121300.1 | Wheat | cytosol | 86.98 | 52.78 |
| TraesCS6B01G159800.1 | Wheat | cytosol | 86.69 | 52.6 |
| HORVU6Hr1G025270.1 | Barley | cytosol | 86.39 | 52.42 |
| GSMUA_Achr8P16590_001 | Banana | plastid | 88.17 | 49.17 |
| Os06t0687700-01 | Rice | plasma membrane | 34.02 | 38.08 |
| CDY72106 | Canola | cytosol | 22.49 | 35.85 |
| CDY72126 | Canola | cytosol | 22.49 | 35.85 |
| CDY16573 | Canola | cytosol | 35.8 | 22.96 |
| CDX70950 | Canola | cytosol | 35.8 | 22.96 |
| CDX92428 | Canola | cytosol | 35.8 | 22.96 |
| CDY09085 | Canola | cytosol | 35.5 | 22.77 |
| CDY42227 | Canola | cytosol | 33.43 | 20.73 |
| CDY25374 | Canola | cytosol | 32.54 | 20.18 |
| CDX82264 | Canola | cytosol | 32.25 | 20.0 |
| CDY24564 | Canola | cytosol | 32.25 | 20.0 |
| CDY36063 | Canola | cytosol | 32.25 | 20.0 |
| CDY33444 | Canola | cytosol | 33.14 | 19.89 |
| CDY50320 | Canola | cytosol | 15.09 | 19.32 |
| CDY54836 | Canola | cytosol | 29.59 | 18.69 |
| CDX79329 | Canola | cytosol | 14.5 | 18.56 |
| CDY36138 | Canola | cytosol | 29.29 | 18.5 |
| CDY18509 | Canola | cytosol | 28.99 | 18.46 |
| CDY24438 | Canola | cytosol, plastid | 28.99 | 18.39 |
| CDX92212 | Canola | cytosol, plastid | 28.99 | 18.39 |
| CDX95541 | Canola | cytosol, plastid | 28.99 | 18.35 |
| CDY03881 | Canola | cytosol | 28.99 | 18.32 |
| CDX84951 | Canola | cytosol | 28.99 | 18.32 |
| CDY51593 | Canola | cytosol | 28.99 | 18.28 |
| CDY18835 | Canola | cytosol | 27.51 | 16.76 |
| CDX74120 | Canola | cytosol | 27.22 | 16.58 |
| CDY49990 | Canola | cytosol | 27.22 | 16.25 |
| CDX88835 | Canola | mitochondrion | 35.8 | 15.92 |
| CDX78670 | Canola | cytosol | 23.96 | 15.14 |
| CDX70671 | Canola | cytosol | 23.96 | 15.14 |
| CDY26490 | Canola | cytosol | 23.96 | 15.11 |
| CDX69477 | Canola | cytosol | 23.96 | 15.11 |
| CDY28697 | Canola | cytosol | 23.67 | 14.95 |
| CDY51544 | Canola | cytosol | 23.67 | 14.95 |
| CDX74202 | Canola | cytosol, plasma membrane | 23.67 | 14.6 |
| CDX92056 | Canola | cytosol | 23.37 | 14.42 |
| CDY42892 | Canola | cytosol | 23.08 | 14.34 |
| CDY29973 | Canola | cytosol | 23.08 | 14.34 |
| CDY50868 | Canola | cytosol | 23.08 | 14.34 |
| CDY21153 | Canola | cytosol | 23.08 | 14.34 |
| CDY71043 | Canola | cytosol | 13.02 | 13.97 |
Protein Annotations
| Gene3D:1.10.560.10 | MapMan:20.3.1.7 | Gene3D:3.50.7.10 | GO:A0A078JNL4 | UniProt:A0A078JNL4 | EnsemblPlants:CDY67306 |
| ProteinID:CDY67306 | ProteinID:CDY67306.1 | InterPro:Chap_CCT_eta | InterPro:Chaperone_TCP-1 | InterPro:Chaperonin_TCP-1_CS | InterPro:Cpn60/TCP-1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0006457 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051082 | InterPro:GROEL-like_equatorial_sf | EnsemblPlantsGene:GSBRNA2T00060617001 | InterPro:GroEL-like_apical_dom_sf |
| InterPro:IPR027409 | InterPro:IPR027410 | InterPro:IPR027413 | PFAM:PF00118 | PRINTS:PR00304 | ScanProsite:PS00751 |
| ScanProsite:PS00995 | PANTHER:PTHR11353 | PANTHER:PTHR11353:SF22 | SUPFAM:SSF48592 | SUPFAM:SSF52029 | SUPFAM:SSF54849 |
| InterPro:TCP-1-like_intermed_sf | UniParc:UPI0004EE9E87 | SEG:seg | : | : | : |
Description
BnaC01g44920DBnaC01g44920D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JNL4]
Coordinates
chrLK035957:+:8399..10796
Molecular Weight (calculated)
36612.1 Da
IEP (calculated)
4.786
GRAVY (calculated)
0.030
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLTFGDKGS VIISNDGATI MKLLDIVHPT AKILVDIAKS QDSEVGDGTT TVVLLAAEFL KEAKPFVEDG VHSQNLIRSY RTASTLAIEK VKELAVSIEG
101: KSVEEKKGLL AKCAATTLSS KLIGGEKEFF ATMVVDAVMA IGDDDRLNLI GIKKVPGGNM RDSFLVDGVA FKKTFSYAGF EQQPKKFLNP KILLLNIELE
201: LKSEKENAEI RLSDPSQYQS IVDAEWNIIY DKLDKCVESG AKVVLSRLAI GDLATQYFAD RDIFCAGRVA EEDLNRVAAA AGGTVQTSVN NIIPEVLGTC
301: EIFEEKQVGG ERFNIFSGCP SGRTATIVLR GGADQVYI
101: KSVEEKKGLL AKCAATTLSS KLIGGEKEFF ATMVVDAVMA IGDDDRLNLI GIKKVPGGNM RDSFLVDGVA FKKTFSYAGF EQQPKKFLNP KILLLNIELE
201: LKSEKENAEI RLSDPSQYQS IVDAEWNIIY DKLDKCVESG AKVVLSRLAI GDLATQYFAD RDIFCAGRVA EEDLNRVAAA AGGTVQTSVN NIIPEVLGTC
301: EIFEEKQVGG ERFNIFSGCP SGRTATIVLR GGADQVYI
001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR
Arabidopsis Description
CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.