Factsheet for PGSC0003DMT400067201

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007592
PGSC0003DMT400017609
PGSC0003DMT400075155

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11830.1	PGSC0003DMT400007592	AT1G19180.1	21798944
AT3G11830.1	PGSC0003DMT400075155	AT1G19180.1	21798944
AT3G11830.1	PGSC0003DMT400017609	AT3G03960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g065520.2.1	Tomato	nucleus, plastid	99.82	99.82
VIT_00s0670g00010.t01	Wine grape	cytosol	93.55	92.88
CDY08491	Canola	cytosol	83.15	92.06
CDY01062	Canola	cytosol	83.15	92.06
AT3G11830.1	Thale cress	cytosol	91.58	91.74
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	91.76	91.43
Bra038682.1-P	Field mustard	cytosol	90.86	91.35
CDX73850	Canola	cytosol	83.87	91.23
Os06t0687700-01	Rice	plasma membrane	49.28	91.06
GSMUA_Achr2P21510_001	Banana	cytosol	83.69	91.03
CDY53919	Canola	cytosol	83.15	90.8
Bra034807.1-P	Field mustard	cytosol	86.38	90.77
EES04545	Sorghum	cytosol	91.04	90.71
KRH73433	Soybean	endoplasmic reticulum, nucleus	91.04	90.71
Zm00001d053857_P002	Maize	cytosol	90.68	90.36
TraesCS6D01G121300.1	Wheat	cytosol	89.96	90.13
Bra001423.1-P	Field mustard	cytosol	90.32	90.0
TraesCS6A01G131400.1	Wheat	cytosol, golgi, mitochondrion, unclear	89.78	89.95
TraesCS6B01G159800.1	Wheat	cytosol	89.78	89.95
HORVU6Hr1G025270.1	Barley	cytosol	89.61	89.77
CDY67306	Canola	cytosol	53.94	89.05
GSMUA_Achr8P16590_001	Banana	plastid	92.47	85.15
PGSC0003DMT400066954	Potato	cytosol	34.05	34.86
PGSC0003DMT400019727	Potato	cytosol	8.6	34.53
PGSC0003DMT400033155	Potato	cytosol	20.25	32.01
PGSC0003DMT400014441	Potato	plastid	30.47	31.54
PGSC0003DMT400027968	Potato	cytosol	12.01	30.59
PGSC0003DMT400060294	Potato	cytosol	30.29	30.45
PGSC0003DMT400050534	Potato	cytosol	16.67	29.43
PGSC0003DMT400073555	Potato	cytosol	12.72	27.2
PGSC0003DMT400033011	Potato	cytosol	24.91	25.98
PGSC0003DMT400062134	Potato	cytosol	24.73	25.79
PGSC0003DMT400017609	Potato	cytosol	24.91	25.69

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:102599617	MapMan:20.3.1.7	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_eta
InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0046686	GO:GO:0051082
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M1CGV3
PFAM:PF00118	EnsemblPlantsGene:PGSC0003DMG400026124	PGSC:PGSC0003DMG400026124	EnsemblPlants:PGSC0003DMT400067201	PRINTS:PR00304	ScanProsite:PS00750
ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF22	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02345	UniParc:UPI0002954A17	RefSeq:XP_006353640.1	SEG:seg

Description

Chaperonin containing t-complex protein 1, eta subunit, tcph [Source:PGSC_GENE;Acc:PGSC0003DMG400026124]

Coordinates

chr6:+:46346751..46354493

Molecular Weight (calculated)

60123.4 Da

IEP (calculated)

6.636

GRAVY (calculated)

-0.113

Length

558 amino acids

Sequence
(BLAST)

001: MSAMMQPQII LLKEGTDTSQ GKAQLVSNIN ACMAVADVVR TTLGPRGMDK LIHDDKGNTT ISNDGATIMK LLDIIHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAGEFLKE AKPFVEEGVH PQNLIRSYRT ASNMAIEKVK ELAVSIEGKS LEEKKSLLAK CAATTLSSKL IGGEKEFFAS MVVDAVLAIG TDDRLNMIGI
201: KKVPGGTMRD SFLVNGVAFK KTFSYAGFEQ QPKKFVNPQI LLLNIELELK SEKENAEIRL SDPAQYQSIV DAEWNIIYDK LDKCVKSGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVSEE DLQRVAAAAG GTVQTTVNNV IDEVLGSCEI FEEKQVGNER FNIFSGCPSG KTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS RFLRHHARTI QGKSQLFINS YAKALEIIPR QLCDNAGFDA TDVLNKLRQK HALPSGEGAP YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAA SAMGGGRGRG RGRGMRRR

Best Arabidopsis Sequence Match ( AT3G11830.1 )
(BLAST)

001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR

Arabidopsis Description

CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.