Factsheet for PGSC0003DMT400073555

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	cytosol
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400033155
PGSC0003DMT400050534

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24510.1	PGSC0003DMT400033155	AT5G20890.1	21798944
AT1G24510.1	PGSC0003DMT400050534	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G054530.14	Barley	cytosol	60.92	53.9
GSMUA_Achr6P06770_001	Banana	cytosol	93.49	50.52
PGSC0003DMT400027968	Potato	cytosol	41.76	49.77
TraesCS1A01G213800.1	Wheat	cytosol	74.33	49.11
KRH31372	Soybean	nucleus	94.64	46.17
KRG97508	Soybean	cytosol, nucleus	94.64	46.17
EER97880	Sorghum	cytosol	93.87	45.79
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	93.87	45.79
EER88530	Sorghum	cytosol	93.49	45.61
GSMUA_AchrUn_...	Banana	cytosol	93.1	45.42
TraesCS7B01G269300.2	Wheat	cytosol	92.72	45.23
TraesCS7D01G364400.2	Wheat	cytosol	92.72	45.23
TraesCS7A01G358400.1	Wheat	cytosol, unclear	92.72	45.23
CDY54836	Canola	cytosol	92.34	45.05
HORVU7Hr1G088080.1	Barley	cytosol	92.72	44.98
CDY36138	Canola	cytosol	91.95	44.86
Bra010965.1-P	Field mustard	cytosol	91.95	44.86
Bra032797.1-P	Field mustard	cytosol	91.57	44.67
CDY51593	Canola	cytosol	91.57	44.59
Zm00001d018694_P002	Maize	cytosol	93.49	44.53
Zm00001d007960_P001	Maize	cytosol	93.49	44.53
CDY03881	Canola	cytosol	91.19	44.49
Bra012506.1-P	Field mustard	cytosol	91.19	44.49
AT1G24510.1	Thale cress	cytosol	91.19	44.49
TraesCS1D01G216600.1	Wheat	cytosol	90.8	44.3
CDX84951	Canola	cytosol	90.8	44.3
TraesCS1B01G227600.1	Wheat	cytosol	90.04	43.93
PGSC0003DMT400033155	Potato	cytosol	25.29	18.7
PGSC0003DMT400050534	Potato	cytosol	22.22	18.35
PGSC0003DMT400014441	Potato	plastid	29.89	14.47
PGSC0003DMT400060294	Potato	cytosol	30.27	14.23
PGSC0003DMT400066954	Potato	cytosol	26.82	12.84
PGSC0003DMT400067201	Potato	cytosol	27.2	12.72
PGSC0003DMT400033011	Potato	cytosol	25.29	12.34
PGSC0003DMT400062134	Potato	cytosol	25.29	12.34
PGSC0003DMT400017609	Potato	cytosol	19.54	9.43
PGSC0003DMT400019727	Potato	cytosol	4.21	7.91

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.5	Gene3D:3.50.7.10	InterPro:Chap_CCT_epsi	InterPro:Chaperone_TCP-1	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006457
GO:GO:0008150	GO:GO:0009506	GO:GO:0009987	GO:GO:0016020	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M1CS85	PFAM:PF00118
EnsemblPlantsGene:PGSC0003DMG401028572	PGSC:PGSC0003DMG401028572	EnsemblPlants:PGSC0003DMT400073555	PRINTS:PR00304	PANTHER:PTHR11353	PANTHER:PTHR11353:SF178
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	UniParc:UPI000296D4E5	:	:

Description

Chaperonin containing t-complex protein 1, epsilon subunit, tcpe [Source:PGSC_GENE;Acc:PGSC0003DMG401028572]

Coordinates

chr1:+:76271798..76273677

Molecular Weight (calculated)

28936.3 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.166

Length

261 amino acids

Sequence
(BLAST)

001: MAEIAVKAVL AVADLERKDV NLDLIKVEGK VGGKLEDTEL IYGIIVDKDM SHPQMPKQIE DAKIAILTCP FEPPKPKTKH KVDIDTVEKF QTLRLQEQKY
101: FDDMVQKCKD VGATLVICQW GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTSEKLG KAGIVREKAF GTTKDRMIYI EHCANSRAVT
201: IFIRGGNKMM IVETKRSIHD ALCVARNLIR NNSIVYGGGS AEISCSNAVE AAADKHPGVE Q

Best Arabidopsis Sequence Match ( AT1G24510.3 )
(BLAST)

001: MNRSIYFLKI DSLSNDGATI LEQMDVDNQI AKLMVELSRS QDYEIGDGTT GVVVMAGALL EQAERQLDRG IHPIRIAEGY EMASRVAVEH LERIAQKFEF
101: DVNNYEPLVQ TCMTTLSSKI VNRCKRSLAE IAVKAVLAVA DLERRDVNLD LIKVEGKVGG KLEDTELIYG ILIDKDMSHP QMPKQIEDAH IAILTCPFEP
201: PKPKTKHKVD IDTVEKFETL RKQEQQYFDE MVQKCKDVGA TLVICQWGFD DEANHLLMHR NLPAVRWVGG VELELIAIAT GGRIVPRFQE LTPEKLGKAG
301: VVREKSFGTT KERMLYIEHC ANSKAVTVFI RGGNKMMIEE TKRSIHDALC VARNLIRNKS IVYGGGAAEI ACSLAVDAAA DKYPGVEQYA IRAFAEALDS
401: VPMALAENSG LQPIETLSAV KSQQIKENIP FYGIDCNDVG TNDMREQNVF ETLIGKQQQI LLATQVVKMI LKIDDVISNS EY

Arabidopsis Description

CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.