CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	cytosol
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00273
EES00491

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24510.1	EES00273	AT5G20890.1	21798944
AT1G24510.1	EES00491	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97880	Sorghum	cytosol	97.94	97.94
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	94.95	94.95
PGSC0003DMT400073555	Potato	cytosol	45.61	93.49
Solyc05g013990.2.1	Tomato	nucleus	91.96	91.96
TraesCS7A01G358400.1	Wheat	cytosol, unclear	91.78	91.78
TraesCS7B01G269300.2	Wheat	cytosol	91.78	91.78
KRH31372	Soybean	nucleus	91.59	91.59
GSMUA_Achr6P06770_001	Banana	cytosol	82.62	91.51
KRG97508	Soybean	cytosol, nucleus	91.4	91.4
TraesCS7D01G364400.2	Wheat	cytosol	91.4	91.4
HORVU7Hr1G088080.1	Barley	cytosol	91.78	91.26
TraesCS1A01G213800.1	Wheat	cytosol	67.29	91.14
TraesCS1D01G216600.1	Wheat	cytosol	90.47	90.47
GSMUA_AchrUn_...	Banana	cytosol	90.28	90.28
TraesCS1B01G227600.1	Wheat	cytosol	89.91	89.91
CDY36138	Canola	cytosol	89.35	89.35
Bra032797.1-P	Field mustard	cytosol	89.35	89.35
CDY51593	Canola	cytosol	89.35	89.18
CDY54836	Canola	cytosol	89.16	89.16
Bra012506.1-P	Field mustard	cytosol	89.16	89.16
CDX84951	Canola	cytosol	89.16	89.16
CDY03881	Canola	cytosol	89.16	89.16
PGSC0003DMT400027968	Potato	cytosol	36.45	89.04
Bra010965.1-P	Field mustard	cytosol	88.97	88.97
AT1G24510.1	Thale cress	cytosol	88.78	88.78
VIT_12s0028g00350.t01	Wine grape	cytosol	88.04	88.04
HORVU1Hr1G054530.14	Barley	cytosol	45.61	82.71
VIT_01s0137g00250.t01	Wine grape	cytosol	90.84	73.41
EER95631	Sorghum	cytosol	35.7	35.7
EES00273	Sorghum	cytosol	33.46	35.1
EES00491	Sorghum	cytosol	34.02	34.67
EES05938	Sorghum	cytosol	31.96	31.38
EER92655	Sorghum	cytosol	31.96	30.65
EES04545	Sorghum	cytosol	30.47	29.11
EER97762	Sorghum	cytosol	26.92	26.92
EES09994	Sorghum	cytosol	25.05	24.45

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.5	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EntrezGene:8061981	UniProt:C5Z4P5
InterPro:Chap_CCT_epsi	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	EnsemblPlants:EER88530	ProteinID:EER88530
ProteinID:EER88530.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832
GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082
GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353
PANTHER:PTHR11353:SF178	EnsemblPlantsGene:SORBI_3010G169300	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	unigene:Sbi.3277
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02343	UniParc:UPI0001A89292	RefSeq:XP_002437163.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:49959346..49964179

Molecular Weight (calculated)

59121.7 Da

IEP (calculated)

5.893

GRAVY (calculated)

-0.184

Length

535 amino acids

Sequence
(BLAST)

001: MALAFDEFGR PFIILREQEK KTRLRGLDAQ KANIAAGKAV ARILRTSLGP KGMDKMLQSP DGDVTITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAEKLL ERGIHPIRVA EGYEMASRVA FDHLERISQK FEFNADNIEP LVQTCMTTLS SKIVHRCKRA LAEIAVKAVL AVADLGRKDV
201: NLDLIKVEGK VGGKLEDTEL IYGIVVDKDM SHPQMPKRIE DAKIAILTCP FEPPKPKTKH KVDIDTVEKF QTLREQEQKY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELSPEKLG KAGLVREKSF GTTKDRMLYI EQCANSRAVT IFIRGGNKMM IEETKRSLHD
401: ALCVARNLIR NNSIVYGGGS AEISCSIAVE TAADRHPGVE QYAIRSFADA LDAVPLALAE NSGLPPIDTL TVVKAQQVKD SNPHCGIDCN DVGTNDMKEQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SPSEY

Best Arabidopsis Sequence Match ( AT1G24510.1 )
(BLAST)

001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDITITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILIDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGVVREKSF GTTKERMLYI EHCANSKAVT VFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVYGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY

Arabidopsis Description

CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.