Factsheet for TraesCS1A01G213800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3B01G595300.1
TraesCS4A01G054800.1
TraesCS4B01G250200.1
TraesCS4D01G250100.1
TraesCS5A01G342600.1
TraesCS5B01G341900.1
TraesCS5D01G347400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24510.1	TraesCS3B01G595300.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS4A01G054800.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS4B01G250200.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS4D01G250100.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS5A01G342600.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS5B01G341900.1	AT5G20890.1	21798944
AT1G24510.1	TraesCS5D01G347400.1	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027968	Potato	cytosol	47.34	85.39
PGSC0003DMT400073555	Potato	cytosol	49.11	74.33
TraesCS1D01G216600.1	Wheat	cytosol	98.99	73.08
TraesCS1B01G227600.1	Wheat	cytosol	98.23	72.52
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	91.65	67.66
EER88530	Sorghum	cytosol	91.14	67.29
EER97880	Sorghum	cytosol	90.89	67.1
TraesCS7A01G358400.1	Wheat	cytosol, unclear	90.13	66.54
Solyc05g013990.2.1	Tomato	nucleus	88.86	65.61
Zm00001d007960_P001	Maize	cytosol	90.89	65.51
Zm00001d018694_P002	Maize	cytosol	90.63	65.33
GSMUA_AchrUn_...	Banana	cytosol	88.1	65.05
KRG97508	Soybean	cytosol, nucleus	88.1	65.05
KRH31372	Soybean	nucleus	88.1	65.05
Bra012506.1-P	Field mustard	cytosol	87.34	64.49
CDY51593	Canola	cytosol	87.34	64.37
CDY36138	Canola	cytosol	87.09	64.3
CDY03881	Canola	cytosol	87.09	64.3
GSMUA_Achr6P06770_001	Banana	cytosol	78.48	64.18
CDY54836	Canola	cytosol	86.84	64.11
CDX84951	Canola	cytosol	86.84	64.11
VIT_12s0028g00350.t01	Wine grape	cytosol	86.84	64.11
AT1G24510.1	Thale cress	cytosol	86.58	63.93
Bra010965.1-P	Field mustard	cytosol	86.58	63.93
Bra032797.1-P	Field mustard	cytosol	86.58	63.93
VIT_01s0137g00250.t01	Wine grape	cytosol	88.86	53.02
HORVU1Hr1G054530.14	Barley	cytosol	33.16	44.41
TraesCS5A01G342600.1	Wheat	cytosol	34.94	26.14
TraesCS4A01G054800.1	Wheat	cytosol, unclear	34.68	26.1
TraesCS7A01G426400.1	Wheat	unclear	34.18	25.28
TraesCS4A01G427500.1	Wheat	cytosol, unclear	32.15	23.3
TraesCS7A01G062100.1	Wheat	cytosol	32.15	23.3
TraesCS7A01G217200.1	Wheat	cytosol	31.9	23.12
TraesCS1A01G205200.1	Wheat	cytosol	30.63	22.2
TraesCS7A01G346200.1	Wheat	cytosol	30.38	21.51
TraesCS6A01G131400.1	Wheat	cytosol, golgi, mitochondrion, unclear	29.37	20.83
TraesCS6A01G399300.1	Wheat	golgi	28.1	20.75
TraesCS4A01G164900.2	Wheat	cytosol	25.06	18.2

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.5	Gene3D:3.50.7.10	InterPro:Chap_CCT_epsi	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751
ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF178	SUPFAM:SSF48592	SUPFAM:SSF52029	TIGRFAMs:TIGR02343
EnsemblPlantsGene:TraesCS1A01G213800	EnsemblPlants:TraesCS1A01G213800.1	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:377015438..377020178

Molecular Weight (calculated)

43814.3 Da

IEP (calculated)

6.033

GRAVY (calculated)

-0.205

Length

395 amino acids

Sequence
(BLAST)

001: MALAFDDFGR PFIILREQES KSRLRGLDAH KANVAAGKAV ARSLRTSLGP KGMDKILQSP DGDVTITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVLAG SLLEQAEKLL ERGIQPIRIA EGYEMASKIA FDHLEHISTR FEFTAANIEP LVQTCMTTLS SKIVNRCKRM LAEIAVRAVL AVADLERKDV
201: NLDLIKVDGK VGGKLEDTEL IYGIAVDKDM SHPQMPKRIE DANIAILTCP FEPPKPNTKH KVDIDTVEKF QTMRGQEQKY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MQRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPDKLG QAGLVREKSF GTTKDRMLCI ERCANSRAVT IFIRGGNKMM IEEAK

Best Arabidopsis Sequence Match ( AT1G24510.1 )
(BLAST)

001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDITITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILIDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGVVREKSF GTTKERMLYI EHCANSKAVT VFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVYGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY

Arabidopsis Description

CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.