Factsheet for TraesCS4A01G164900.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G213800.1
TraesCS1B01G227600.1
TraesCS1D01G216600.1
TraesCS6A01G131400.1
TraesCS6A01G399300.1
TraesCS6B01G159800.1
TraesCS6D01G121300.1
TraesCS6D01G383500.1
TraesCS7A01G358400.1
TraesCS7B01G269300.2
TraesCS7D01G364400.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03960.1	TraesCS1A01G213800.1	AT1G24510.1	21798944
AT3G03960.1	TraesCS1B01G227600.1	AT1G24510.1	21798944
AT3G03960.1	TraesCS1D01G216600.1	AT1G24510.1	21798944
AT3G03960.1	TraesCS7A01G358400.1	AT1G24510.1	21798944
AT3G03960.1	TraesCS7B01G269300.2	AT1G24510.1	21798944
AT3G03960.1	TraesCS7D01G364400.2	AT1G24510.1	21798944
AT3G03960.1	TraesCS6A01G131400.1	AT3G11830.1	21798944
AT3G03960.1	TraesCS6B01G159800.1	AT3G11830.1	21798944
AT3G03960.1	TraesCS6D01G121300.1	AT3G11830.1	21798944
AT3G03960.1	TraesCS6A01G399300.1	AT5G16070.1	21798944
AT3G03960.1	TraesCS6D01G383500.1	AT5G16070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G165400.1	Wheat	cytosol	98.53	99.26
TraesCS4D01G157300.1	Wheat	cytosol	97.43	98.7
HORVU4Hr1G040660.1	Barley	cytosol	96.69	97.41
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	91.91	91.58
EES09994	Sorghum	cytosol	91.73	91.06
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	90.62	89.96
Zm00001d007508_P005	Maize	cytosol	90.44	85.86
Solyc01g088080.2.1	Tomato	nucleus	84.93	85.4
PGSC0003DMT400017609	Potato	cytosol	84.74	85.21
GSMUA_Achr8P04580_001	Banana	cytosol	85.11	85.11
GSMUA_Achr3P25570_001	Banana	cytosol	84.38	84.38
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	84.38	84.22
KRH70153	Soybean	nucleus	83.82	83.67
VIT_08s0007g07460.t01	Wine grape	cytosol	83.64	83.49
Bra036422.1-P	Field mustard	cytosol	78.68	78.68
CDY29973	Canola	cytosol	78.49	78.49
CDY21153	Canola	cytosol	78.12	78.12
CDX92056	Canola	cytosol	78.49	77.92
Bra001094.1-P	Field mustard	cytosol	78.12	77.55
CDX74202	Canola	cytosol, plasma membrane	78.12	77.55
CDY42892	Canola	cytosol	77.39	77.39
AT3G03960.1	Thale cress	cytosol	77.94	77.23
Bra031959.1-P	Field mustard	cytosol	77.21	77.21
CDY50868	Canola	cytosol	77.02	77.02
CDY50320	Canola	cytosol	35.29	72.73
CDX79329	Canola	cytosol	34.38	70.83
TraesCS1A01G205200.1	Wheat	cytosol	27.02	26.97
TraesCS7A01G346200.1	Wheat	cytosol	27.39	26.7
TraesCS7A01G062100.1	Wheat	cytosol	26.29	26.24
TraesCS4A01G427500.1	Wheat	cytosol, unclear	26.1	26.05
TraesCS7A01G217200.1	Wheat	cytosol	26.1	26.05
TraesCS4A01G054800.1	Wheat	cytosol, unclear	24.26	25.14
TraesCS7A01G426400.1	Wheat	unclear	24.63	25.09
TraesCS1A01G213800.1	Wheat	cytosol	18.2	25.06
TraesCS5A01G342600.1	Wheat	cytosol	24.26	25.0
TraesCS7A01G358400.1	Wheat	cytosol, unclear	23.53	23.93
TraesCS6A01G131400.1	Wheat	cytosol, golgi, mitochondrion, unclear	24.45	23.88
TraesCS6A01G399300.1	Wheat	golgi	22.98	23.36

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.8	Gene3D:3.50.7.10	InterPro:Chap_CCT_theta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006457	GO:GO:0006810	GO:GO:0008150	GO:GO:0009506	GO:GO:0009987	GO:GO:0016020
GO:GO:0044183	GO:GO:0051050	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751
PANTHER:PTHR11353	PANTHER:PTHR11353:SF78	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02346	EnsemblPlantsGene:TraesCS4A01G164900	EnsemblPlants:TraesCS4A01G164900.2	TIGR:cd03341	SEG:seg	:

Description

No Description!

Coordinates

chr4A:-:384393053..384398650

Molecular Weight (calculated)

58481.6 Da

IEP (calculated)

5.232

GRAVY (calculated)

-0.046

Length

544 amino acids

Sequence
(BLAST)

001: MVGYGIQSML KDGHKHLSGL DEAVLKNIGA GRELSAITRT SLGPNGMNKM VINHLDKLFI TNDAATIVNE LDVQHPAAKL LVLAARAQQE EIGDGANLTI
101: SFAGELLEKA EELIRMGLHP SEIIIGYTKA INKTLEILDD LVEKGSENMD VRNKEEVVLR MKSAVASKQF GQEDVLCPLV ADACIQVCPQ NPANFNVDNV
201: RVAKLVGGGL HNSSVVRGMV LKNDAVGSIK KVEKVKVAVF AGGVDTSATE TKGTVLIHSA EQLENYAKTE EAKVEELIKS VADSGAKVIV SGAAVGDMAL
301: HFCERYKLMV LKVSSKFELR RFCRTTGAIA LLKLSRPNVD ELGYADSVSV EEIGGARVTV VKNEEGGNSV ATVVLRGSTD SILDDLERAV DDGVNTYKSM
401: CRDSRIIPGA AATEIELAKR LKEFSLKETG QLCRLDQYAI AKFGESFEMV PRTLSENAGL GAMEIISSLY AEHAAGNVKV GIDLEKGACE DASIMKIWDL
501: YVTKSFALKY SADAVCTVLR VDQIIMAKPA GGPRPPQQGG MDED

Best Arabidopsis Sequence Match ( AT3G03960.1 )
(BLAST)

001: MVGMSMQPYG IQSMLKEGYR HLSGLDEAVI KNIEACKELS TITRTSLGPN GMNKMVINHL DKLFVTNDAA TIVNELEIQH PAAKLLVLAA KAQQEEIGDG
101: ANLTISFAGE LLQNAEELIR MGLHPSEIIS GYTKAVSKAV EILEQLVETG SETMDVRNKD EVISRMRAAV ASKQFGQEEI ICSLVTDACI QVCPKNPTNF
201: NVDNVRVSKL LGGGLHNSCI VRGMVLKSDA VGSIKRMEKA KVAVFAGGVD TTATETKGTV LIHSAEQLEN YAKTEEAKVE ELIKAVAESG AKVIVSGGSI
301: GEMALHFCER YKIMVLKISS KFELRRFCRT AGAVAHLKLS RPSPEDLGYV DSISVEEIGG VTVTIARNEE GGNSISTVVL RGSTDSILDD LERAVDDGVN
401: TYKAMCRDSR IVPGAAATEI ELAQRLKEYA NAEIGLDKYA ITKYAESFEF VPKTLADNAG LNAMEIIAAL YTGHGSGNTK LGIDLEEGAC KDVSETKVWD
501: LFATKLFALK YASDAACTVL RVDQIIMAKP AGGPRRDAAQ AAGAGAEED

Arabidopsis Description

CCT8T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q94K05]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.