Factsheet for TraesCS4A01G427500.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G056800.1	Wheat	cytosol	99.63	99.63
TraesCS7A01G062100.1	Wheat	cytosol	99.63	99.63
TraesCS7A01G217200.1	Wheat	cytosol	97.61	97.61
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	92.11	92.11
Zm00001d052056_P005	Maize	plasma membrane	90.46	90.46
EES05938	Sorghum	cytosol	90.46	90.46
Zm00001d018349_P001	Maize	cytosol	90.09	90.09
TraesCS1A01G205200.1	Wheat	cytosol	89.91	89.91
HORVU7Hr1G044070.2	Barley	cytosol	91.38	87.22
VIT_15s0021g02230.t01	Wine grape	cytosol	86.42	86.26
KRH59103	Soybean	nucleus	86.06	86.06
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	86.06	86.06
Solyc01g090750.2.1	Tomato	nucleus	85.5	85.5
PGSC0003DMT400066954	Potato	cytosol	85.32	85.32
AT3G20050.1	Thale cress	cytosol	84.95	84.95
CDY42227	Canola	cytosol	84.59	84.59
CDY25374	Canola	cytosol	84.59	84.59
CDY24564	Canola	cytosol	84.4	84.4
CDY36063	Canola	cytosol	82.94	82.94
CDX82264	Canola	cytosol	82.94	82.94
Bra001773.1-P	Field mustard	cytosol	82.94	82.78
Bra035820.1-P	Field mustard	cytosol	84.4	82.73
CDY33444	Canola	cytosol	84.4	81.71
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	40.18	79.93
Bra038252.1-P	Field mustard	cytosol	84.59	60.58
TraesCS5A01G342600.1	Wheat	cytosol	35.05	36.17
TraesCS4A01G054800.1	Wheat	cytosol, unclear	34.68	36.0
TraesCS6A01G131400.1	Wheat	cytosol, golgi, mitochondrion, unclear	35.05	34.29
TraesCS1A01G213800.1	Wheat	cytosol	23.3	32.15
TraesCS7A01G358400.1	Wheat	cytosol, unclear	31.19	31.78
TraesCS7A01G426400.1	Wheat	unclear	29.72	30.34
TraesCS7A01G346200.1	Wheat	cytosol	29.36	28.67
TraesCS6A01G399300.1	Wheat	golgi	26.24	26.73
TraesCS4A01G164900.2	Wheat	cytosol	26.05	26.1

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.1	Gene3D:3.50.7.10	InterPro:Chap_CCT_alpha	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304
ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF177	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02340	EnsemblPlantsGene:TraesCS4A01G427500	EnsemblPlants:TraesCS4A01G427500.1
TIGR:cd03335	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:698426815..698432810

Molecular Weight (calculated)

59287.7 Da

IEP (calculated)

6.107

GRAVY (calculated)

-0.087

Length

545 amino acids

Sequence
(BLAST)

001: MAITSQVPDI MGERQSGQDV RTQNVSACQA VANIVKSSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIIA
101: AELLKRANEL VRNKIHPTSI ISGYRLAMRE ACKYVEEKLS VKVDRLGKDS LINCAKTSMS SKLITTDGNF FANLVVEAVQ AVKTTNSKGE VKYPIKSINI
201: LKAHGKSAKE SYLLNGYALN TGRAAQGMPT RVTPARIACL DFNLQKTKMQ MGVQVLVSDP RELEKIRERE SDITKERIQK VLKAGANVVF TTKGIDDMSL
301: KYFVEAGAIA VRRVRKEDLR HVAKATGATM VTTFADMEGE ETFDPSFLGH ASEVVEERIS DDEIILVKGT KNTSAVSIIL RGANDFMLDE IERSLHDALC
401: IVKRTLESNT VVAGGGAVEA ALSVYLENLA TTLGSREQLA IAEFAEALLI IPKVLAVNAA KDATDLVAQL RAYHNKAQTN ADKQHLSSMG LDLTKGVIRN
501: NLEHGVIEPA MSKVKIIQFA TEAAITIVRI DDMIKLDKEE SGQEE

Best Arabidopsis Sequence Match ( AT3G20050.1 )
(BLAST)

001: MSISAQNPDI SGDRQSGQDV RTQNVMACQA VSNIVKTSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE SCKYIEEKLV TKVEKLGKVP LINCAKTSMS SKLISGDSDF FANLVVEAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLNGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKEDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA DDDVILIKGT KTSSAVSLIL RGANDYMLDE MERALHDALC
401: IVKRTLESNT VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFADALLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHYSSMG LDLVNGTIRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKDE SQGEE

Arabidopsis Description

CCT1T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P28769]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.