Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
- plastid 1
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G052730.26 | Barley | cytosol | 83.21 | 58.76 |
| TraesCS1D01G208500.1 | Wheat | cytosol | 83.21 | 45.78 |
| GSMUA_Achr11P... | Banana | cytosol | 89.42 | 44.38 |
| Os04t0551800-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 85.04 | 42.75 |
| Zm00001d052056_P005 | Maize | plasma membrane | 84.67 | 42.57 |
| EES05938 | Sorghum | cytosol | 84.67 | 42.57 |
| Zm00001d018349_P001 | Maize | cytosol | 84.67 | 42.57 |
| TraesCS1A01G205200.1 | Wheat | cytosol | 82.85 | 41.65 |
| TraesCS7B01G124100.1 | Wheat | cytosol, golgi, unclear | 81.02 | 40.73 |
| TraesCS7A01G062100.1 | Wheat | cytosol | 80.29 | 40.37 |
| TraesCS7D01G056800.1 | Wheat | cytosol | 80.29 | 40.37 |
| TraesCS7A01G217200.1 | Wheat | cytosol | 80.29 | 40.37 |
| TraesCS4A01G427500.1 | Wheat | cytosol, unclear | 79.93 | 40.18 |
| HORVU7Hr1G044070.2 | Barley | cytosol | 81.39 | 39.05 |
| TraesCS7D01G218500.2 | Wheat | cytosol | 80.29 | 38.53 |
| TraesCS1B01G218800.1 | Wheat | cytosol | 59.85 | 34.75 |
| GSMUA_Achr3P20910_001 | Banana | cytosol | 25.18 | 19.94 |
| GSMUA_Achr2P21510_001 | Banana | cytosol | 31.02 | 16.57 |
| GSMUA_Achr6P06770_001 | Banana | cytosol | 27.74 | 15.73 |
| GSMUA_Achr2P01800_001 | Banana | cytosol | 28.83 | 14.99 |
| GSMUA_AchrUn_... | Banana | cytosol | 29.2 | 14.95 |
| GSMUA_Achr8P16590_001 | Banana | plastid | 31.39 | 14.19 |
| GSMUA_Achr3P24440_001 | Banana | peroxisome | 28.1 | 14.0 |
| GSMUA_Achr6P09540_001 | Banana | cytosol | 18.25 | 13.62 |
| GSMUA_Achr3P25570_001 | Banana | cytosol | 25.18 | 12.68 |
| GSMUA_Achr8P04580_001 | Banana | cytosol | 24.45 | 12.32 |
| GSMUA_Achr6P23290_001 | Banana | cytosol | 24.45 | 12.03 |
| GSMUA_Achr5P09040_001 | Banana | cytosol | 24.45 | 12.03 |
| GSMUA_Achr1P14710_001 | Banana | cytosol | 22.99 | 11.78 |
| GSMUA_Achr4P16540_001 | Banana | cytosol | 22.63 | 11.59 |
| GSMUA_Achr2P01090_001 | Banana | cytosol | 9.85 | 7.48 |
| GSMUA_Achr9P07660_001 | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.560.10 | Gene3D:3.30.260.10 | Gene3D:3.50.7.10 | MapMan:35.1 | InterPro:Chaperone_TCP-1 | InterPro:Cpn60/TCP-1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0016020 | GO:GO:0016021 | InterPro:GROEL-like_equatorial_sf | EnsemblPlantsGene:GSMUA_Achr2G01100_001 |
| EnsemblPlants:GSMUA_Achr2P01100_001 | EnsemblPlants:GSMUA_Achr2T01100_001 | InterPro:GroEL-like_apical_dom_sf | InterPro:IPR027409 | InterPro:IPR027410 | InterPro:IPR027413 |
| UniProt:M0S451 | PFAM:PF00118 | PRINTS:PR00304 | PANTHER:PTHR11353 | PANTHER:PTHR11353:SF177 | SUPFAM:SSF48592 |
| SUPFAM:SSF52029 | SUPFAM:SSF54849 | InterPro:TCP-1-like_intermed_sf | TMHMM:TMhelix | UniParc:UPI000295B1B7 | SEG:seg |
Description
T-complex protein 1 subunit alpha [Source:GMGC_GENE;Acc:GSMUA_Achr2G01100_001]
Coordinates
chr2:+:6238199..6246446
Molecular Weight (calculated)
29861.9 Da
IEP (calculated)
4.710
GRAVY (calculated)
0.085
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MISYWTNVSK KINNAYVGGS LLAIDICSFY FVESGAIAVR RVRKDDLRHV AKATGATVVT TFADMEGEET FDLSLLGHAD EVIEERIADD DVILIKGTKN
101: SSAVSLILRG ANDYMLDEMD RALHDALCIV KRTLESNMVV AGGGAVEAAL SVYLEYLATT LGSREQLAIA EFAESLLVIP KVLSVNAAKD ATELVAKLQA
201: YHHTAQTKAD KQHLSSMGLD LSKGIVRNNL EAGVIEPAMS KVKIIQFATE AAITILRIDD MIKLVKDERE TEED
101: SSAVSLILRG ANDYMLDEMD RALHDALCIV KRTLESNMVV AGGGAVEAAL SVYLEYLATT LGSREQLAIA EFAESLLVIP KVLSVNAAKD ATELVAKLQA
201: YHHTAQTKAD KQHLSSMGLD LSKGIVRNNL EAGVIEPAMS KVKIIQFATE AAITILRIDD MIKLVKDERE TEED
001: MSISAQNPDI SGDRQSGQDV RTQNVMACQA VSNIVKTSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE SCKYIEEKLV TKVEKLGKVP LINCAKTSMS SKLISGDSDF FANLVVEAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLNGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKEDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA DDDVILIKGT KTSSAVSLIL RGANDYMLDE MERALHDALC
401: IVKRTLESNT VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFADALLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHYSSMG LDLVNGTIRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKDE SQGEE
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE SCKYIEEKLV TKVEKLGKVP LINCAKTSMS SKLISGDSDF FANLVVEAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLNGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKEDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA DDDVILIKGT KTSSAVSLIL RGANDYMLDE MERALHDALC
401: IVKRTLESNT VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFADALLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHYSSMG LDLVNGTIRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKDE SQGEE
Arabidopsis Description
CCT1T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P28769]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.