Factsheet for GSMUA_Achr2P01800_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g00480.t01	Wine grape	cytosol	91.84	91.49
CDY71043	Canola	cytosol	54.46	91.11
Os05t0556700-01	Rice	cytosol, plasma membrane	56.55	90.85
TraesCS4D01G250100.1	Wheat	cytosol	85.39	90.0
Bra020134.1-P	Field mustard	cytosol	86.53	89.94
Solyc11g069000.1.1	Tomato	extracellular	89.75	89.92
TraesCS4B01G250200.1	Wheat	cytosol	85.2	89.8
KRH25193	Soybean	nucleus	89.75	89.75
KRH30467	Soybean	nucleus	89.56	89.56
Os03t0619400-01	Rice	plasma membrane	89.18	89.52
EES00491	Sorghum	cytosol	89.18	89.52
EES00273	Sorghum	cytosol	86.53	89.41
PGSC0003DMT400050534	Potato	cytosol	53.51	89.24
Zm00001d040257_P001	Maize	cytosol	88.8	89.14
Bra002337.1-P	Field mustard	cytosol	88.99	88.99
CDX70950	Canola	cytosol	88.99	88.99
CDY16573	Canola	cytosol	88.99	88.99
TraesCS4A01G054800.1	Wheat	cytosol, unclear	88.61	88.95
CDX92428	Canola	cytosol	88.8	88.8
TraesCS5A01G342600.1	Wheat	cytosol	88.61	88.45
CDY09085	Canola	cytosol	88.42	88.42
TraesCS5D01G347400.1	Wheat	cytosol	88.42	88.26
Zm00001d008369_P001	Maize	cytosol, nucleus	87.86	88.19
TraesCS5B01G341900.1	Wheat	cytosol	88.61	87.95
AT5G20890.1	Thale cress	cytosol	87.86	87.86
PGSC0003DMT400033155	Potato	cytosol	58.82	87.82
GSMUA_Achr3P24440_001	Banana	peroxisome	90.7	86.91
CDY72106	Canola	cytosol	34.35	85.38
CDY72126	Canola	cytosol	34.16	84.91
HORVU5Hr1G085530.1	Barley	mitochondrion	88.42	84.88
HORVU4Hr1G068820.1	Barley	cytosol	88.42	83.21
Zm00001d040688_P001	Maize	cytosol	40.04	75.09
TraesCS3B01G595300.1	Wheat	cytosol	19.17	74.81
Bra006584.1-P	Field mustard	cytosol	88.42	62.3
CDX88835	Canola	mitochondrion	88.42	61.32
Zm00001d052882_P001	Maize	plastid	40.04	41.62
GSMUA_Achr3P20910_001	Banana	cytosol	24.29	36.99
GSMUA_Achr2P21510_001	Banana	cytosol	33.59	34.5
GSMUA_Achr11P...	Banana	cytosol	35.67	34.06
GSMUA_AchrUn_...	Banana	cytosol	33.59	33.08
GSMUA_Achr2P01090_001	Banana	cytosol	22.58	32.96
GSMUA_Achr6P06770_001	Banana	cytosol	30.17	32.92
GSMUA_Achr8P16590_001	Banana	plastid	36.81	32.01
GSMUA_Achr6P09540_001	Banana	cytosol	21.44	30.79
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	14.99	28.83
GSMUA_Achr4P16540_001	Banana	cytosol	27.89	27.48
GSMUA_Achr1P14710_001	Banana	cytosol	27.89	27.48
GSMUA_Achr6P23290_001	Banana	cytosol	27.32	25.85
GSMUA_Achr5P09040_001	Banana	cytosol	27.13	25.67
GSMUA_Achr8P04580_001	Banana	cytosol	26.19	25.37
GSMUA_Achr3P25570_001	Banana	cytosol	26.19	25.37
GSMUA_Achr9P07660_001	Banana	cytosol	0.57	18.75

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.2	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_beta	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr2G01800_001	EnsemblPlants:GSMUA_Achr2P01800_001
EnsemblPlants:GSMUA_Achr2T01800_001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M0S4C1
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353
PANTHER:PTHR11353:SF23	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02341
UniParc:UPI000294FEF8	:	:	:	:	:

Description

T-complex protein 1 subunit beta [Source:GMGC_GENE;Acc:GSMUA_Achr2G01800_001]

Coordinates

chr2:-:7598677..7605140

Molecular Weight (calculated)

57136.4 Da

IEP (calculated)

6.340

GRAVY (calculated)

-0.111

Length

527 amino acids

Sequence
(BLAST)

001: MAAARLLKDE ATEEKGDRAR MASFIGAMAI ADLVKTTLGP KGMDKILQST GRGRNVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVNQKIHPMT IIAGYRMAAE CARNALLLKA KDNKQDPDKF KSDLMKIAMT TLSSKILSQD KEHFAKLAVD AVLRLKGSTN LESIQIIKKA
201: GGSLKDSFLD EGFILDKKIG IGQPKHIENA KILVANTAMD TDKVKIYGAR VRVDSMAKVA EIEGAEKEKM KQKVQKIIAH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFDGIERLAL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGV EMGQACTVVL RGASSHVLDE AERSLHDALC VLSQTVNDSR
401: VLLGGGWPEM VMAKEVDELA RKTPGKKSHA IEAFSRSLQA IPTIIADNAG LDSAELISQL RAEHHKDTTN AGIDIISGGV GDMDKLGISE AFKVKQAVLL
501: SATEAAEMIL RVDEIITCAP RRREDRM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.