Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 5
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
endoplasmic reticulum: 27224218 nucleus: 27291164 endoplasmic reticulum: 28499913 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH25193 | Soybean | nucleus | 99.05 | 99.05 |
VIT_18s0001g00480.t01 | Wine grape | cytosol | 92.79 | 92.44 |
Solyc11g069000.1.1 | Tomato | extracellular | 90.51 | 90.68 |
CDY71043 | Canola | cytosol | 54.08 | 90.48 |
GSMUA_Achr2P01800_001 | Banana | cytosol | 89.56 | 89.56 |
PGSC0003DMT400050534 | Potato | cytosol | 53.7 | 89.56 |
Os05t0556700-01 | Rice | cytosol, plasma membrane | 55.6 | 89.33 |
Bra020134.1-P | Field mustard | cytosol | 85.77 | 89.15 |
Bra002337.1-P | Field mustard | cytosol | 88.99 | 88.99 |
Os03t0619400-01 | Rice | plasma membrane | 88.61 | 88.95 |
AT5G20890.1 | Thale cress | cytosol | 88.8 | 88.8 |
TraesCS4D01G250100.1 | Wheat | cytosol | 84.25 | 88.8 |
TraesCS4B01G250200.1 | Wheat | cytosol | 84.06 | 88.6 |
PGSC0003DMT400033155 | Potato | cytosol | 59.2 | 88.39 |
EES00491 | Sorghum | cytosol | 87.67 | 88.0 |
EES00273 | Sorghum | cytosol | 85.01 | 87.84 |
TraesCS4A01G054800.1 | Wheat | cytosol, unclear | 87.48 | 87.81 |
TraesCS5A01G342600.1 | Wheat | cytosol | 87.67 | 87.5 |
TraesCS5D01G347400.1 | Wheat | cytosol | 87.48 | 87.31 |
Zm00001d040257_P001 | Maize | cytosol | 86.91 | 87.24 |
TraesCS5B01G341900.1 | Wheat | cytosol | 87.67 | 87.01 |
Zm00001d008369_P001 | Maize | cytosol, nucleus | 85.96 | 86.29 |
HORVU5Hr1G085530.1 | Barley | mitochondrion | 87.48 | 83.97 |
HORVU4Hr1G068820.1 | Barley | cytosol | 87.29 | 82.14 |
GSMUA_Achr3P24440_001 | Banana | peroxisome | 83.68 | 80.18 |
Zm00001d040688_P001 | Maize | cytosol | 39.28 | 73.67 |
TraesCS3B01G595300.1 | Wheat | cytosol | 18.41 | 71.85 |
Bra006584.1-P | Field mustard | cytosol | 88.61 | 62.43 |
KRH33254 | Soybean | cytosol | 6.45 | 43.04 |
Zm00001d052882_P001 | Maize | plastid | 39.66 | 41.22 |
KRH62761 | Soybean | mitochondrion | 9.87 | 38.24 |
KRH76087 | Soybean | cytosol, endoplasmic reticulum | 10.44 | 35.03 |
KRH59103 | Soybean | nucleus | 35.86 | 34.68 |
KRH42973 | Soybean | cytosol, endoplasmic reticulum, nucleus | 35.86 | 34.68 |
KRH57568 | Soybean | cytosol | 7.21 | 34.55 |
KRH49364 | Soybean | endoplasmic reticulum, nucleus | 33.02 | 34.05 |
KRH60476 | Soybean | endoplasmic reticulum | 34.35 | 33.96 |
KRH41771 | Soybean | endoplasmic reticulum, nucleus | 34.35 | 33.96 |
KRG97508 | Soybean | cytosol, nucleus | 34.16 | 33.64 |
KRH31372 | Soybean | nucleus | 34.16 | 33.64 |
KRH73433 | Soybean | endoplasmic reticulum, nucleus | 35.1 | 33.04 |
KRH14704 | Soybean | cytosol, endoplasmic reticulum, nucleus | 35.1 | 33.04 |
KRH46911 | Soybean | endoplasmic reticulum | 29.6 | 29.16 |
KRH01781 | Soybean | nucleus | 29.41 | 28.97 |
KRH38791 | Soybean | cytosol | 29.41 | 27.98 |
KRG92501 | Soybean | cytosol | 29.03 | 27.47 |
KRH09301 | Soybean | cytosol, endoplasmic reticulum, nucleus | 28.65 | 27.26 |
KRH08492 | Soybean | cytosol, endoplasmic reticulum, nucleus | 26.38 | 25.5 |
KRH70153 | Soybean | nucleus | 26.38 | 25.5 |
KRH62778 | Soybean | cytosol, endoplasmic reticulum | 14.04 | 21.08 |
Protein Annotations
Gene3D:1.10.560.10 | EntrezGene:100794780 | MapMan:20.3.1.2 | Gene3D:3.30.260.10 | Gene3D:3.50.7.10 | EMBL:ACUP02007019 |
InterPro:Chap_CCT_beta | InterPro:Chaperone_TCP-1 | InterPro:Chaperonin_TCP-1_CS | InterPro:Cpn60/TCP-1 | EnsemblPlantsGene:GLYMA_11G185500 | GO:GO:0000166 |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005832 | GO:GO:0006457 | GO:GO:0006458 |
GO:GO:0008150 | GO:GO:0009987 | GO:GO:0044183 | GO:GO:0051082 | GO:GO:0061077 | InterPro:GROEL-like_equatorial_sf |
InterPro:GroEL-like_apical_dom_sf | UniProt:I1LKU1 | InterPro:IPR027409 | InterPro:IPR027410 | InterPro:IPR027413 | EnsemblPlants:KRH30467 |
ProteinID:KRH30467 | ProteinID:KRH30467.1 | PFAM:PF00118 | PRINTS:PR00304 | ScanProsite:PS00750 | ScanProsite:PS00751 |
ScanProsite:PS00995 | PANTHER:PTHR11353 | PANTHER:PTHR11353:SF23 | SUPFAM:SSF48592 | SUPFAM:SSF52029 | SUPFAM:SSF54849 |
InterPro:TCP-1-like_intermed_sf | TIGRFAMs:TIGR02341 | UniParc:UPI000233C263 | : | : | : |
Description
hypothetical protein
Coordinates
chr11:-:25416977..25424958
Molecular Weight (calculated)
57083.3 Da
IEP (calculated)
5.555
GRAVY (calculated)
-0.035
Length
527 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIDNIFKHE ASEEKGERAR MASFVGAMAI ADLVKTTLGP KGMDKILQST GRGREVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVAAKIHPMT IISGFRMAAE CARNALLEKV VDNKADSEKF RSDLLNIAMT TLSSKILSQD KDHFAKLAVD AVMRLKGSTN LESIQIIKKP
201: GGSLMDSFLD EGFILDKKIG IGQPKRIENA KILVANTAMD TDKVKIYGAR VRVDSMARVA QIETAEKEKM REKVQKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFDGIERLAL VTGGEIASTF DNPESVKLGH CDLIEEIMIG EDKLIHFSGV AMGQACTIVL RGASHHVLDE AERSLHDALC VLSQTVNDSR
401: VLLGGGWPEM VMAKEVDALA KKTPGKKSLA IEAFSRALLA IPTIIADNAG LDSAELISQL RAEHQKEGCT SGIDVISGSV GDMAERGISE AFKVKQAVLL
501: SSTEAAEMIL RVDEIITCAP RRREDRM
101: AGELLREAEK LVAAKIHPMT IISGFRMAAE CARNALLEKV VDNKADSEKF RSDLLNIAMT TLSSKILSQD KDHFAKLAVD AVMRLKGSTN LESIQIIKKP
201: GGSLMDSFLD EGFILDKKIG IGQPKRIENA KILVANTAMD TDKVKIYGAR VRVDSMARVA QIETAEKEKM REKVQKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFDGIERLAL VTGGEIASTF DNPESVKLGH CDLIEEIMIG EDKLIHFSGV AMGQACTIVL RGASHHVLDE AERSLHDALC VLSQTVNDSR
401: VLLGGGWPEM VMAKEVDALA KKTPGKKSLA IEAFSRALLA IPTIIADNAG LDSAELISQL RAEHQKEGCT SGIDVISGSV GDMAERGISE AFKVKQAVLL
501: SSTEAAEMIL RVDEIITCAP RRREDRM
001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM
Arabidopsis Description
CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.