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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 5
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH25193 Soybean nucleus 99.05 99.05
VIT_18s0001g00480.t01 Wine grape cytosol 92.79 92.44
Solyc11g069000.1.1 Tomato extracellular 90.51 90.68
CDY71043 Canola cytosol 54.08 90.48
GSMUA_Achr2P01800_001 Banana cytosol 89.56 89.56
PGSC0003DMT400050534 Potato cytosol 53.7 89.56
Os05t0556700-01 Rice cytosol, plasma membrane 55.6 89.33
Bra020134.1-P Field mustard cytosol 85.77 89.15
Bra002337.1-P Field mustard cytosol 88.99 88.99
Os03t0619400-01 Rice plasma membrane 88.61 88.95
AT5G20890.1 Thale cress cytosol 88.8 88.8
TraesCS4D01G250100.1 Wheat cytosol 84.25 88.8
TraesCS4B01G250200.1 Wheat cytosol 84.06 88.6
PGSC0003DMT400033155 Potato cytosol 59.2 88.39
EES00491 Sorghum cytosol 87.67 88.0
EES00273 Sorghum cytosol 85.01 87.84
TraesCS4A01G054800.1 Wheat cytosol, unclear 87.48 87.81
TraesCS5A01G342600.1 Wheat cytosol 87.67 87.5
TraesCS5D01G347400.1 Wheat cytosol 87.48 87.31
Zm00001d040257_P001 Maize cytosol 86.91 87.24
TraesCS5B01G341900.1 Wheat cytosol 87.67 87.01
Zm00001d008369_P001 Maize cytosol, nucleus 85.96 86.29
HORVU5Hr1G085530.1 Barley mitochondrion 87.48 83.97
HORVU4Hr1G068820.1 Barley cytosol 87.29 82.14
GSMUA_Achr3P24440_001 Banana peroxisome 83.68 80.18
Zm00001d040688_P001 Maize cytosol 39.28 73.67
TraesCS3B01G595300.1 Wheat cytosol 18.41 71.85
Bra006584.1-P Field mustard cytosol 88.61 62.43
KRH33254 Soybean cytosol 6.45 43.04
Zm00001d052882_P001 Maize plastid 39.66 41.22
KRH62761 Soybean mitochondrion 9.87 38.24
KRH76087 Soybean cytosol, endoplasmic reticulum 10.44 35.03
KRH59103 Soybean nucleus 35.86 34.68
KRH42973 Soybean cytosol, endoplasmic reticulum, nucleus 35.86 34.68
KRH57568 Soybean cytosol 7.21 34.55
KRH49364 Soybean endoplasmic reticulum, nucleus 33.02 34.05
KRH60476 Soybean endoplasmic reticulum 34.35 33.96
KRH41771 Soybean endoplasmic reticulum, nucleus 34.35 33.96
KRG97508 Soybean cytosol, nucleus 34.16 33.64
KRH31372 Soybean nucleus 34.16 33.64
KRH73433 Soybean endoplasmic reticulum, nucleus 35.1 33.04
KRH14704 Soybean cytosol, endoplasmic reticulum, nucleus 35.1 33.04
KRH46911 Soybean endoplasmic reticulum 29.6 29.16
KRH01781 Soybean nucleus 29.41 28.97
KRH38791 Soybean cytosol 29.41 27.98
KRG92501 Soybean cytosol 29.03 27.47
KRH09301 Soybean cytosol, endoplasmic reticulum, nucleus 28.65 27.26
KRH08492 Soybean cytosol, endoplasmic reticulum, nucleus 26.38 25.5
KRH70153 Soybean nucleus 26.38 25.5
KRH62778 Soybean cytosol, endoplasmic reticulum 14.04 21.08
Protein Annotations
Gene3D:1.10.560.10EntrezGene:100794780MapMan:20.3.1.2Gene3D:3.30.260.10Gene3D:3.50.7.10EMBL:ACUP02007019
InterPro:Chap_CCT_betaInterPro:Chaperone_TCP-1InterPro:Chaperonin_TCP-1_CSInterPro:Cpn60/TCP-1EnsemblPlantsGene:GLYMA_11G185500GO:GO:0000166
GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005832GO:GO:0006457GO:GO:0006458
GO:GO:0008150GO:GO:0009987GO:GO:0044183GO:GO:0051082GO:GO:0061077InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sfUniProt:I1LKU1InterPro:IPR027409InterPro:IPR027410InterPro:IPR027413EnsemblPlants:KRH30467
ProteinID:KRH30467ProteinID:KRH30467.1PFAM:PF00118PRINTS:PR00304ScanProsite:PS00750ScanProsite:PS00751
ScanProsite:PS00995PANTHER:PTHR11353PANTHER:PTHR11353:SF23SUPFAM:SSF48592SUPFAM:SSF52029SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sfTIGRFAMs:TIGR02341UniParc:UPI000233C263:::
Description
hypothetical protein
Coordinates
chr11:-:25416977..25424958
Molecular Weight (calculated)
57083.3 Da
IEP (calculated)
5.555
GRAVY (calculated)
-0.035
Length
527 amino acids
Sequence
(BLAST)
001: MAIDNIFKHE ASEEKGERAR MASFVGAMAI ADLVKTTLGP KGMDKILQST GRGREVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVAAKIHPMT IISGFRMAAE CARNALLEKV VDNKADSEKF RSDLLNIAMT TLSSKILSQD KDHFAKLAVD AVMRLKGSTN LESIQIIKKP
201: GGSLMDSFLD EGFILDKKIG IGQPKRIENA KILVANTAMD TDKVKIYGAR VRVDSMARVA QIETAEKEKM REKVQKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFDGIERLAL VTGGEIASTF DNPESVKLGH CDLIEEIMIG EDKLIHFSGV AMGQACTIVL RGASHHVLDE AERSLHDALC VLSQTVNDSR
401: VLLGGGWPEM VMAKEVDALA KKTPGKKSLA IEAFSRALLA IPTIIADNAG LDSAELISQL RAEHQKEGCT SGIDVISGSV GDMAERGISE AFKVKQAVLL
501: SSTEAAEMIL RVDEIITCAP RRREDRM
Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)
001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM
Arabidopsis Description
CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.