Factsheet for Os05t0556700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71043	Canola	cytosol	84.15	87.62
Os03t0619400-01	Rice	plasma membrane	93.6	58.48
GSMUA_Achr2P01800_001	Banana	cytosol	90.85	56.55
Bra020134.1-P	Field mustard	cytosol	87.2	56.41
VIT_18s0001g00480.t01	Wine grape	cytosol	90.85	56.33
KRH30467	Soybean	nucleus	89.33	55.6
KRH25193	Soybean	nucleus	89.33	55.6
Solyc11g069000.1.1	Tomato	extracellular	88.72	55.32
AT5G20890.1	Thale cress	cytosol	88.11	54.84
Bra002337.1-P	Field mustard	cytosol	87.8	54.65
CDY16573	Canola	cytosol	87.8	54.65
CDX92428	Canola	cytosol	87.8	54.65
CDX70950	Canola	cytosol	87.8	54.65
CDY09085	Canola	cytosol	87.2	54.27
GSMUA_Achr3P24440_001	Banana	peroxisome	84.45	50.36
Bra006584.1-P	Field mustard	cytosol	87.5	38.37
CDX88835	Canola	mitochondrion	87.5	37.76
Os06t0687700-01	Rice	plasma membrane	28.05	30.46
Zm00001d052882_P001	Maize	plastid	42.68	27.61
Os02t0332200-01	Rice	plasma membrane	30.49	18.73
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	31.1	18.72
Os10t0514600-01	Rice	plasma membrane	28.96	17.56
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	28.35	17.38
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	26.83	16.45
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	24.7	14.84
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	24.7	14.52
Os02t0247200-01	Rice	cytosol	23.48	13.77
PGSC0003DMT400019727	Potato	cytosol	2.44	5.76
CDY72106	Canola	cytosol	3.35	5.19
CDY72126	Canola	cytosol	3.35	5.19

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.2	Gene3D:3.50.7.10	ProteinID:BAF18196.1	ProteinID:BAS95272.1	InterPro:Chap_CCT_beta
InterPro:Chaperone_TCP-1	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	EnsemblPlantsGene:Os05g0556700	EnsemblPlants:Os05t0556700-01	PFAM:PF00118	PRINTS:PR00304	PANTHER:PTHR11353
PANTHER:PTHR11353:SF23	UniProt:Q0DG27	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02341	UniParc:UPI0000E125DD	:	:	:	:

Description

Similar to Cct2-prov protein. (Os05t0556700-01)

Coordinates

chr5:+:27686725..27688323

Molecular Weight (calculated)

35758.1 Da

IEP (calculated)

5.181

GRAVY (calculated)

-0.133

Length

328 amino acids

Sequence
(BLAST)

001: TGGSLKDSFL DEGFILDKKI GLGQPKRIEN AKILVANTAM DTDKVKIYGA RVRVDSMAKV AEIEAAEKQK MREKVQKIIG HGINCFVNRQ LIYNFPEELF
101: ADAGILAIEH ADFEGIERLA LVTGGDIAST FDNPESVKLG HCKVIEEIMI GEDRLIHFSG VEMGQACTIV LRGASEHVLD EAERSLHDAL CVLSQTVNDT
201: RVLYGGGWPE MVMAKEVDGL ARKTPGKKSH AIEAFSRALQ SIPTIIADNA GLDSADLISQ LRAEHHKEQS TAGIDVISGG VGDMEKLGIS ESFKAKQAVL
301: MSATEAAEMI LRVDEIVTCA PRRREDRM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.