Factsheet for Os06t0687700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
YLoc:	cytosol

plasma membrane: 18260611
nucleus: 19621931
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0402800-01
Os03t0804800-01
Os07t0615200-01
Os09t0439200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11830.1	Os03t0402800-01	AT1G19180.1	21798944
AT3G11830.1	Os07t0615200-01	AT1G19180.1	21798944
AT3G11830.1	Os09t0439200-01	AT1G19180.1	21798944
AT3G11830.1	Os03t0804800-01	AT3G03960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P21510_001	Banana	cytosol	94.04	55.36
CDX73850	Canola	cytosol	91.39	53.8
CDY01062	Canola	cytosol	89.74	53.77
CDY08491	Canola	cytosol	89.74	53.77
CDY53919	Canola	cytosol	90.4	53.42
EES04545	Sorghum	cytosol	97.68	52.68
Zm00001d053857_P002	Maize	cytosol	96.03	51.79
TraesCS6A01G131400.1	Wheat	cytosol, golgi, mitochondrion, unclear	93.71	50.81
HORVU6Hr1G025270.1	Barley	cytosol	93.71	50.81
TraesCS6D01G121300.1	Wheat	cytosol	93.05	50.45
TraesCS6B01G159800.1	Wheat	cytosol	93.05	50.45
VIT_00s0670g00010.t01	Wine grape	cytosol	93.71	50.36
KRH73433	Soybean	endoplasmic reticulum, nucleus	93.05	50.18
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	92.72	50.0
Bra038682.1-P	Field mustard	cytosol	91.72	49.91
AT3G11830.1	Thale cress	cytosol	91.72	49.73
Solyc06g065520.2.1	Tomato	nucleus, plastid	91.06	49.28
PGSC0003DMT400067201	Potato	cytosol	91.06	49.28
Bra001423.1-P	Field mustard	cytosol	91.06	49.11
Bra034807.1-P	Field mustard	cytosol	82.45	46.89
GSMUA_Achr8P16590_001	Banana	plastid	93.38	46.53
CDY67306	Canola	cytosol	38.08	34.02
Os05t0556700-01	Rice	cytosol, plasma membrane	30.46	28.05
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	31.46	17.43
Os03t0619400-01	Rice	plasma membrane	29.8	17.14
Os02t0332200-01	Rice	plasma membrane	27.48	15.54
Os10t0514600-01	Rice	plasma membrane	27.48	15.34
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	28.15	15.23
Os02t0247200-01	Rice	cytosol	27.81	15.03
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	24.5	13.83
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	22.85	12.9
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	22.85	12.64

Protein Annotations

Gene3D:1.10.560.10	Gene3D:3.50.7.10	MapMan:35.1	ProteinID:BAF20323.1	ProteinID:BAS99207.1	InterPro:Chap_CCT_eta
InterPro:Chaperone_TCP-1	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183
GO:GO:0046686	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027413	EnsemblPlantsGene:Os06g0687700	EnsemblPlants:Os06t0687700-01	PFAM:PF00118	PRINTS:PR00304	PANTHER:PTHR11353
PANTHER:PTHR11353:SF22	UniProt:Q0DA00	SUPFAM:SSF48592	SUPFAM:SSF52029	UniParc:UPI0000E12926	SEG:seg

Description

Similar to T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta) (HIV-1 Nef interacting protein). (Os06t0687700-01)

Coordinates

chr6:-:28682065..28684964

Molecular Weight (calculated)

32375.4 Da

IEP (calculated)

6.294

GRAVY (calculated)

-0.146

Length

302 amino acids

Sequence
(BLAST)

001: RLSDPLQYQS IVDAEWNIIY DKLDKCVKSG AKIVLSRLAI GDLATQYFAD RDIFCAGRVA EEDLQRVAAA TGGTVQTSVN NVIDEVLGTC EVFEERQVGN
101: ERFNIFSGCP SGQTATIVLR GGADQFIEEA ERSLHDAIMI VRRALKNSTV VPGGGAIDME ISKYLRQHAR TIAGKSQFFV NSFAKALEVI PRQLCDNAGF
201: DATDVLNKLR QKHASGEGAN FGVDINTGGI ADSFANFVWE PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAA SAMAGRGGGA MRGRGGRGMR
301: RR

Best Arabidopsis Sequence Match ( AT3G11830.1 )
(BLAST)

001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR

Arabidopsis Description

CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.