Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08491 | Canola | cytosol | 89.23 | 98.61 |
| CDY01062 | Canola | cytosol | 89.05 | 98.41 |
| Bra038682.1-P | Field mustard | cytosol | 97.67 | 98.02 |
| CDX73850 | Canola | cytosol | 90.13 | 97.86 |
| CDY53919 | Canola | cytosol | 89.59 | 97.65 |
| Bra034807.1-P | Field mustard | cytosol | 93.0 | 97.55 |
| Bra001423.1-P | Field mustard | cytosol | 97.31 | 96.79 |
| CDY67306 | Canola | cytosol | 58.35 | 96.15 |
| EES04545 | Sorghum | cytosol | 92.28 | 91.79 |
| Solyc06g065520.2.1 | Tomato | nucleus, plastid | 91.92 | 91.76 |
| Os06t0687700-01 | Rice | plasma membrane | 49.73 | 91.72 |
| PGSC0003DMT400067201 | Potato | cytosol | 91.74 | 91.58 |
| KRH14704 | Soybean | cytosol, endoplasmic reticulum, nucleus | 91.74 | 91.25 |
| VIT_00s0670g00010.t01 | Wine grape | cytosol | 91.92 | 91.1 |
| GSMUA_Achr2P21510_001 | Banana | cytosol | 83.66 | 90.84 |
| Zm00001d053857_P002 | Maize | cytosol | 91.02 | 90.54 |
| KRH73433 | Soybean | endoplasmic reticulum, nucleus | 90.84 | 90.36 |
| TraesCS6A01G131400.1 | Wheat | cytosol, golgi, mitochondrion, unclear | 89.59 | 89.59 |
| TraesCS6D01G121300.1 | Wheat | cytosol | 89.59 | 89.59 |
| TraesCS6B01G159800.1 | Wheat | cytosol | 89.41 | 89.41 |
| HORVU6Hr1G025270.1 | Barley | cytosol | 89.23 | 89.23 |
| GSMUA_Achr8P16590_001 | Banana | plastid | 91.02 | 83.66 |
| AT5G20890.1 | Thale cress | cytosol | 33.39 | 35.29 |
| AT3G20050.1 | Thale cress | cytosol | 34.11 | 34.86 |
| AT3G18190.1 | Thale cress | cytosol, plastid | 31.6 | 32.84 |
| AT5G26360.1 | Thale cress | cytosol | 31.42 | 31.53 |
| AT1G24510.1 | Thale cress | cytosol | 28.37 | 29.53 |
| AT3G03960.1 | Thale cress | cytosol | 25.85 | 26.23 |
| AT3G02530.1 | Thale cress | cytosol | 24.06 | 25.05 |
| AT5G16070.1 | Thale cress | cytosol | 23.88 | 24.86 |
Protein Annotations
| Gene3D:1.10.560.10 | MapMan:20.3.1.7 | Gene3D:3.30.260.10 | Gene3D:3.50.7.10 | EntrezGene:820356 | UniProt:A0A178VGX5 |
| ProteinID:AAF23199.1 | ProteinID:AEE75105.1 | ProteinID:AEE75106.1 | ArrayExpress:AT3G11830 | EnsemblPlantsGene:AT3G11830 | RefSeq:AT3G11830 |
| TAIR:AT3G11830 | RefSeq:AT3G11830-TAIR-G | EnsemblPlants:AT3G11830.1 | TAIR:AT3G11830.1 | EMBL:AY070472 | EMBL:AY102137 |
| Unigene:At.23522 | InterPro:Chap_CCT_eta | InterPro:Chaperone_TCP-1 | InterPro:Chaperonin_TCP-1_CS | InterPro:Cpn60/TCP-1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005832 | GO:GO:0006457 | GO:GO:0006458 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0044183 | GO:GO:0046686 | GO:GO:0051082 | GO:GO:0061077 |
| InterPro:GROEL-like_equatorial_sf | InterPro:GroEL-like_apical_dom_sf | InterPro:IPR027409 | InterPro:IPR027410 | InterPro:IPR027413 | RefSeq:NP_001189863.1 |
| RefSeq:NP_187789.1 | ProteinID:OAP04152.1 | PFAM:PF00118 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR00304 | ScanProsite:PS00750 | ScanProsite:PS00751 | ScanProsite:PS00995 | PANTHER:PTHR11353 | PANTHER:PTHR11353:SF22 |
| UniProt:Q9SF16 | SUPFAM:SSF48592 | SUPFAM:SSF52029 | SUPFAM:SSF54849 | InterPro:TCP-1-like_intermed_sf | TIGRFAMs:TIGR02345 |
| UniParc:UPI000009D0E9 | SEG:seg | : | : | : | : |
Description
CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
Coordinates
chr3:+:3732657..3736471
Molecular Weight (calculated)
59779.8 Da
IEP (calculated)
6.297
GRAVY (calculated)
-0.094
Length
557 amino acids
Sequence
(BLAST)
(BLAST)
001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.