Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74120 | Canola | cytosol | 96.4 | 96.4 |
| Bra001174.1-P | Field mustard | cytosol | 96.4 | 96.4 |
| CDY18835 | Canola | cytosol | 95.86 | 95.86 |
| Bra040242.1-P | Field mustard | cytosol | 95.68 | 95.68 |
| CDY49990 | Canola | cytosol | 96.22 | 94.35 |
| VIT_07s0130g00410.t01 | Wine grape | cytosol | 91.89 | 91.56 |
| GSMUA_Achr6P23290_001 | Banana | cytosol | 90.27 | 89.95 |
| VIT_17s0000g08170.t01 | Wine grape | cytosol | 88.83 | 88.51 |
| PGSC0003DMT400060294 | Potato | cytosol | 88.11 | 88.11 |
| GSMUA_Achr5P09040_001 | Banana | cytosol | 88.11 | 87.79 |
| KRH09301 | Soybean | cytosol, endoplasmic reticulum, nucleus | 87.57 | 87.73 |
| Solyc05g056310.2.1 | Tomato | extracellular, plastid | 87.75 | 87.43 |
| KRH38791 | Soybean | cytosol | 87.21 | 87.36 |
| EER92655 | Sorghum | cytosol | 87.03 | 86.56 |
| Zm00001d028183_P002 | Maize | cytosol | 87.03 | 86.56 |
| KRG92501 | Soybean | cytosol | 86.31 | 86.0 |
| Os06t0538000-01 | Rice | cytosol, plasma membrane, plastid | 86.31 | 85.84 |
| TraesCS7A01G346200.1 | Wheat | cytosol | 86.13 | 85.66 |
| Os02t0247200-01 | Rice | cytosol | 85.59 | 84.97 |
| HORVU7Hr1G080310.1 | Barley | cytosol | 85.41 | 84.95 |
| TraesCS7D01G332900.1 | Wheat | cytosol | 85.77 | 84.25 |
| TraesCS7B01G237000.1 | Wheat | cytosol | 85.59 | 84.07 |
| Zm00001d053553_P002 | Maize | cytosol | 86.31 | 73.47 |
| AT1G24510.1 | Thale cress | cytosol | 31.35 | 32.52 |
| AT3G11830.1 | Thale cress | cytosol | 31.53 | 31.42 |
| AT3G20050.1 | Thale cress | cytosol | 29.01 | 29.54 |
| AT3G18190.1 | Thale cress | cytosol, plastid | 28.47 | 29.48 |
| AT5G20890.1 | Thale cress | cytosol | 26.67 | 28.08 |
| AT3G03960.1 | Thale cress | cytosol | 25.59 | 25.87 |
| AT5G16070.1 | Thale cress | cytosol | 23.42 | 24.3 |
| AT3G02530.1 | Thale cress | cytosol | 23.24 | 24.11 |
Protein Annotations
| Gene3D:1.10.560.10 | MapMan:20.3.1.3 | Gene3D:3.30.260.10 | Gene3D:3.50.7.10 | EntrezGene:832705 | UniProt:A0A178UHF4 |
| ProteinID:AAC26244.1 | ProteinID:AED93554.1 | ArrayExpress:AT5G26360 | EnsemblPlantsGene:AT5G26360 | RefSeq:AT5G26360 | TAIR:AT5G26360 |
| RefSeq:AT5G26360-TAIR-G | EnsemblPlants:AT5G26360.1 | TAIR:AT5G26360.1 | Unigene:At.21400 | EMBL:BT002737 | InterPro:Chap_CCT_gamma |
| InterPro:Chaperone_TCP-1 | InterPro:Chaperonin_TCP-1_CS | ncoils:Coil | InterPro:Cpn60/TCP-1 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005832 | GO:GO:0006457 | GO:GO:0006458 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0044183 | GO:GO:0051082 | GO:GO:0061077 | InterPro:GROEL-like_equatorial_sf | InterPro:GroEL-like_apical_dom_sf |
| InterPro:IPR027409 | InterPro:IPR027410 | InterPro:IPR027413 | RefSeq:NP_198008.1 | ProteinID:OAO93089.1 | PFAM:PF00118 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR00304 | ScanProsite:PS00750 | ScanProsite:PS00751 | ScanProsite:PS00995 | PANTHER:PTHR11353 | PANTHER:PTHR11353:SF24 |
| UniProt:Q84WV1 | SUPFAM:SSF48592 | SUPFAM:SSF52029 | SUPFAM:SSF54849 | InterPro:TCP-1-like_intermed_sf | TIGRFAMs:TIGR02344 |
| UniParc:UPI000000BD94 | : | : | : | : | : |
Description
CCT3T-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A178UHF4]
Coordinates
chr5:-:9255053..9259028
Molecular Weight (calculated)
60342.9 Da
IEP (calculated)
5.469
GRAVY (calculated)
-0.140
Length
555 amino acids
Sequence
(BLAST)
(BLAST)
001: MHAPVLVLSD SLKRESGSKV HHGNIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNAILRELDV AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF LEKNYHPTVI CRAYIKALED SIAVLDKIAM SIDINDRSQV LGLVKSCIGT KFTSQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQFED SEVLKGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILKFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDIGTGAGLF EVKKIGDDFF SFIVDCKEPK ACTVLLRGPS KDFINEVERN LQDAMSVARN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKIWDSYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGSGPSKPT IETEGDADNE QILPD
101: GEMLHVAEAF LEKNYHPTVI CRAYIKALED SIAVLDKIAM SIDINDRSQV LGLVKSCIGT KFTSQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQFED SEVLKGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILKFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDIGTGAGLF EVKKIGDDFF SFIVDCKEPK ACTVLLRGPS KDFINEVERN LQDAMSVARN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKIWDSYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGSGPSKPT IETEGDADNE QILPD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.