Factsheet for GSMUA_Achr6P23290_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P09040_001	Banana	cytosol	96.41	96.41
VIT_07s0130g00410.t01	Wine grape	cytosol	93.0	93.0
Bra001174.1-P	Field mustard	cytosol	90.66	90.99
CDX74120	Canola	cytosol	90.66	90.99
VIT_17s0000g08170.t01	Wine grape	cytosol	90.84	90.84
AT5G26360.1	Thale cress	cytosol	89.95	90.27
CDY18835	Canola	cytosol	89.77	90.09
EER92655	Sorghum	cytosol	89.95	89.78
Bra040242.1-P	Field mustard	cytosol	89.41	89.73
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	89.23	89.71
KRH38791	Soybean	cytosol	89.23	89.71
Zm00001d028183_P002	Maize	cytosol	89.59	89.43
Os02t0247200-01	Rice	cytosol	89.59	89.27
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	89.23	89.07
CDY49990	Canola	cytosol	90.48	89.05
PGSC0003DMT400060294	Potato	cytosol	88.33	88.65
Solyc05g056310.2.1	Tomato	extracellular, plastid	88.15	88.15
KRG92501	Soybean	cytosol	87.43	87.43
HORVU7Hr1G080310.1	Barley	cytosol	87.25	87.1
TraesCS7A01G346200.1	Wheat	cytosol	87.25	87.1
TraesCS7B01G237000.1	Wheat	cytosol	87.43	86.19
TraesCS7D01G332900.1	Wheat	cytosol	87.07	85.84
Zm00001d053553_P002	Maize	cytosol	89.23	76.23
GSMUA_Achr3P20910_001	Banana	cytosol	19.75	31.79
GSMUA_Achr6P06770_001	Banana	cytosol	26.93	31.06
GSMUA_AchrUn_...	Banana	cytosol	29.8	31.03
GSMUA_Achr2P21510_001	Banana	cytosol	27.11	29.43
GSMUA_Achr11P...	Banana	cytosol	28.9	29.17
GSMUA_Achr8P16590_001	Banana	plastid	30.16	27.72
GSMUA_Achr3P25570_001	Banana	cytosol	26.93	27.57
GSMUA_Achr2P01800_001	Banana	cytosol	25.85	27.32
GSMUA_Achr3P24440_001	Banana	peroxisome	26.93	27.27
GSMUA_Achr2P01090_001	Banana	cytosol	17.41	26.87
GSMUA_Achr6P09540_001	Banana	cytosol	17.59	26.7
GSMUA_Achr8P04580_001	Banana	cytosol	26.03	26.65
GSMUA_Achr1P14710_001	Banana	cytosol	24.78	25.79
GSMUA_Achr4P16540_001	Banana	cytosol	24.6	25.61
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	12.03	24.45
GSMUA_Achr9P07660_001	Banana	cytosol	0.36	12.5

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.3	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_gamma	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr6G23290_001
EnsemblPlants:GSMUA_Achr6P23290_001	EnsemblPlants:GSMUA_Achr6T23290_001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
UniProt:M0T9H7	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF24	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02344	UniParc:UPI00029690B6	:	:	:	:

Description

T-complex protein 1 subunit gamma [Source:GMGC_GENE;Acc:GSMUA_Achr6G23290_001]

Coordinates

chr6:+:23355783..23365891

Molecular Weight (calculated)

60607.6 Da

IEP (calculated)

6.343

GRAVY (calculated)

-0.148

Length

557 amino acids

Sequence
(BLAST)

001: MHAPVLVLKD SLKRESGSKV HHANIQASKA VADIIRTTLG PRSMLKMLLD AAGGIVVTND GNAILRELDL AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAATF IDKNYHPTVI CRAYNKALED SIAVLDKIAM PIDVTDRATM LGLVKSCIGT KFTGQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQLED SKVLKGVMIN KDVVAPGKMR RKILNPRIIL LDCPLEYKKG ENQTNAELVK EEDWEVLLKM EEEYIQNLCM QILKFKPDLV ITEKGLSDLA
301: CHYLSKAGVS AIRRLRKTDN NRIAKACGAV VVNRPEELQE SDIGTGAGLF EIKKFGDEFF AFIVDCKDPK ACTVLLRGAS KDLLNEVERN LQDAMSVARN
401: ILKNPKLLPG GGATELTVSA ALKQKSSSIE GIEKWPYEAA AVAFEAIPRT LAQNCGVNVI RTMTALQGKH ANAGNEWVGI DGNTGDIVDM KERKIWDSYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGAGPTPSK PKIEEEGDAD NEQILPD

Best Arabidopsis Sequence Match ( AT5G26360.1 )
(BLAST)

001: MHAPVLVLSD SLKRESGSKV HHGNIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNAILRELDV AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF LEKNYHPTVI CRAYIKALED SIAVLDKIAM SIDINDRSQV LGLVKSCIGT KFTSQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQFED SEVLKGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILKFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDIGTGAGLF EVKKIGDDFF SFIVDCKEPK ACTVLLRGPS KDFINEVERN LQDAMSVARN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKIWDSYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGSGPSKPT IETEGDADNE QILPD

Arabidopsis Description

CCT3T-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A178UHF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.