Factsheet for GSMUA_Achr6P09540_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P01800_001
GSMUA_Achr3P24440_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18190.1	GSMUA_Achr2P01800_001	AT5G20890.1	21798944
AT3G18190.1	GSMUA_Achr3P24440_001	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0332200-01	Rice	plasma membrane	78.47	53.93
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	78.2	53.85
Zm00001d051742_P001	Maize	plastid	77.38	53.08
Zm00001d027371_P001	Maize	plasma membrane	77.38	53.08
EER95631	Sorghum	cytosol	77.38	53.08
KRH49364	Soybean	endoplasmic reticulum, nucleus	72.75	52.25
HORVU7Hr1G034140.1	Barley	plasma membrane	76.02	52.25
KRH60476	Soybean	endoplasmic reticulum	75.75	52.16
TraesCS7D01G164400.1	Wheat	cytosol	75.75	52.06
TraesCS7A01G426400.1	Wheat	unclear	75.75	52.06
AT3G18190.1	Thale cress	cytosol, plastid	76.02	52.05
KRH41771	Soybean	endoplasmic reticulum, nucleus	75.48	51.97
Bra021300.1-P	Field mustard	cytosol	74.93	51.79
CDY24438	Canola	cytosol, plastid	75.2	51.78
TraesCS7B01G068100.1	Wheat	golgi, unclear	75.2	51.69
CDY18509	Canola	cytosol	74.66	51.6
CDX92212	Canola	cytosol, plastid	74.93	51.59
CDX95541	Canola	cytosol, plastid	74.93	51.5
Bra022292.1-P	Field mustard	cytosol, plastid	74.66	51.41
Os10t0514600-01	Rice	plasma membrane	75.75	51.39
PGSC0003DMT400014441	Potato	plastid	75.2	51.21
Solyc03g118910.1.1	Tomato	plastid	74.66	50.83
TraesCS6B01G391500.1	Wheat	mitochondrion	68.12	47.89
GSMUA_Achr3P20910_001	Banana	cytosol	44.96	47.69
GSMUA_Achr6P06770_001	Banana	cytosol	33.79	25.67
GSMUA_AchrUn_...	Banana	cytosol	32.97	22.62
GSMUA_Achr2P01800_001	Banana	cytosol	30.79	21.44
GSMUA_Achr2P21510_001	Banana	cytosol	29.7	21.25
GSMUA_Achr11P...	Banana	cytosol	29.7	19.75
GSMUA_Achr3P24440_001	Banana	peroxisome	28.61	19.09
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	13.62	18.25
GSMUA_Achr2P01090_001	Banana	cytosol	17.71	18.01
GSMUA_Achr8P16590_001	Banana	plastid	29.43	17.82
GSMUA_Achr5P09040_001	Banana	cytosol	26.98	17.77
GSMUA_Achr6P23290_001	Banana	cytosol	26.7	17.59
GSMUA_Achr1P14710_001	Banana	cytosol	24.25	16.64
GSMUA_Achr4P16540_001	Banana	cytosol	23.98	16.45
GSMUA_Achr8P04580_001	Banana	cytosol	23.71	15.99
GSMUA_Achr3P25570_001	Banana	cytosol	23.71	15.99
GSMUA_Achr9P07660_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.4	Gene3D:3.50.7.10	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr6G09540_001	EnsemblPlants:GSMUA_Achr6P09540_001	EnsemblPlants:GSMUA_Achr6T09540_001	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M0T5K3	PFAM:PF00118	PRINTS:PR00304
ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF26	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	UniParc:UPI00029616C0	SEG:seg	:	:	:

Description

T-complex protein 1 subunit delta [Source:GMGC_GENE;Acc:GSMUA_Achr6G09540_001]

Coordinates

chr6:-:6437024..6440115

Molecular Weight (calculated)

39904.7 Da

IEP (calculated)

6.868

GRAVY (calculated)

0.113

Length

367 amino acids

Sequence
(BLAST)

001: MIASTNGEVV IINDGATILN KMEVLQPAAK MLVDLSRSQD AAAGDGTTTV VVLAGSLLRR SLSLLSAGVH PTAVSDALHR LSLRAIDVLH GIAIPLDLSD
101: RDALATATSV SQSAGGPTRV ENAKIVVIQF QISPPKADIE QSIVVSDYTQ MDRILREERN YTLGMVKKIK ATGCNVLPIQ KSILRDAVTD LSLHYLAKAK
201: ILVIKDIERD DIEFITKTLN CLPIANIEHF REEKLGFANC VEEVSFGDGK IVKITGIKDM SRTTTVFVRG SNQLVIDEAE HSLHDALCVV RCLVNKRFLI
301: AGGGAPEIEM SRQLVAWAKE LRGMDSYCIK EFAEAVEVIP YTLSENAMPR VRSMLGLTLG RARSPTS

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.