Factsheet for Bra021300.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
plastid 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002337.1-P
Bra006584.1-P
Bra020134.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18190.1	Bra002337.1-P	AT5G20890.1	21798944
AT3G18190.1	Bra006584.1-P	AT5G20890.1	21798944
AT3G18190.1	Bra020134.1-P	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18509	Canola	cytosol	99.81	99.81
Bra022292.1-P	Field mustard	cytosol, plastid	98.12	97.75
AT3G18190.1	Thale cress	cytosol, plastid	95.48	94.59
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	89.64	89.31
KRH60476	Soybean	endoplasmic reticulum	89.45	89.12
KRH41771	Soybean	endoplasmic reticulum, nucleus	89.45	89.12
PGSC0003DMT400014441	Potato	plastid	89.27	87.94
Solyc03g118910.1.1	Tomato	plastid	89.08	87.76
KRH49364	Soybean	endoplasmic reticulum, nucleus	82.86	86.11
GSMUA_Achr3P20910_001	Banana	cytosol	54.8	84.1
Os02t0332200-01	Rice	plasma membrane	79.47	79.03
EER95631	Sorghum	cytosol	79.47	78.88
HORVU7Hr1G034140.1	Barley	plasma membrane	79.28	78.84
Zm00001d027371_P001	Maize	plasma membrane	79.28	78.69
TraesCS7A01G426400.1	Wheat	unclear	78.72	78.28
TraesCS7B01G068100.1	Wheat	golgi, unclear	78.72	78.28
TraesCS7D01G164400.1	Wheat	cytosol	78.72	78.28
Zm00001d051742_P001	Maize	plastid	78.53	77.94
Os10t0514600-01	Rice	plasma membrane	76.65	75.23
GSMUA_Achr6P09540_001	Banana	cytosol	51.79	74.93
TraesCS6B01G391500.1	Wheat	mitochondrion	72.5	73.75
Bra032797.1-P	Field mustard	cytosol	36.72	36.45
Bra012506.1-P	Field mustard	cytosol	36.72	36.45
Bra010965.1-P	Field mustard	cytosol	36.53	36.26
Bra020134.1-P	Field mustard	cytosol	32.2	33.73
Bra002337.1-P	Field mustard	cytosol	33.15	33.4
Bra001773.1-P	Field mustard	cytosol	33.71	32.78
Bra035820.1-P	Field mustard	cytosol	33.33	31.83
Bra034807.1-P	Field mustard	cytosol	31.07	31.07
Bra038682.1-P	Field mustard	cytosol	31.83	30.45
Bra001423.1-P	Field mustard	cytosol	31.64	30.0
Bra040242.1-P	Field mustard	cytosol	30.51	29.19
Bra001174.1-P	Field mustard	cytosol	30.51	29.19
Bra040591.1-P	Field mustard	cytosol	25.24	25.05
Bra036422.1-P	Field mustard	cytosol	25.61	25.0
Bra008652.1-P	Field mustard	cytosol	25.24	25.0
Bra001094.1-P	Field mustard	cytosol	25.24	24.45
Bra031959.1-P	Field mustard	cytosol	24.67	24.08
Bra006338.1-P	Field mustard	cytosol	20.34	23.79
Bra035423.1-P	Field mustard	cytosol	9.98	23.66
Bra006584.1-P	Field mustard	cytosol	33.15	23.53
Bra038252.1-P	Field mustard	cytosol	33.52	23.39

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.4	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EnsemblPlantsGene:Bra021300	EnsemblPlants:Bra021300.1
EnsemblPlants:Bra021300.1-P	InterPro:Chap_CCT_delta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M4DXQ4
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF26
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02342	UniParc:UPI0002545219

Description

AT3G18190 (E=3e-283) | chaperonin, putative

Coordinates

chrA01:-:22687714..22689309

Molecular Weight (calculated)

57227.9 Da

IEP (calculated)

7.264

GRAVY (calculated)

0.089

Length

531 amino acids

Sequence
(BLAST)

001: MAAASRPRAS KAESFVDNKR KEDIRSANIN AGRAVADAVR TSLGPKGMDK MISTASGEVI ITNDGATILN KMDVLQPAAK MMVELSKSQD SAAGDGTTTV
101: VVLAGALLRV CQSLLASGIH PTVISDALHK SCYKSVDILT AMAVPVELTD RDSLVKSAST SLNSKVVSQY STLLAPLAVD AVLSVIDPEK PEIVDLRDIK
201: IVKKLGGTVD DTHTVNGLVF DKKVSHAAGG PTRMENANIA VIQFQISPPK TDIEQSIVVS DYTQMDRILK EERNYILGMI KKIKATGCNV LLIQKSILRD
301: AVTDLSLHYL AKAKIMVIKD VERDEIEFVT KTLNCLPIAN IEHFRAEKLG HADLVEEASL GDGKILKITG IKDMGRTTSV LVRGSNQLVL DEAERSLHDA
401: LCVVRCLVSK RFLIAGGGAP EIELSRQLGA WAKVLHGMEG YCVKSFAEAL EVIPYTLAEN AGLNPIAIVT ELRNKHAQGE INAGINVRKG QITNILEENV
501: VQPLLVSTSA ITLATECVRM ILKIDDIVTV R

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.