Factsheet for Bra006338.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78670	Canola	cytosol	98.68	83.74
CDX70671	Canola	cytosol	98.68	83.74
Bra008652.1-P	Field mustard	cytosol	96.92	82.09
Bra040591.1-P	Field mustard	cytosol	95.59	81.12
AT5G16070.1	Thale cress	cytosol	95.59	81.12
Solyc02g085790.2.1	Tomato	extracellular	90.53	76.82
PGSC0003DMT400062134	Potato	cytosol	90.31	76.64
Solyc02g063090.2.1	Tomato	nucleus, unclear	90.09	76.45
VIT_14s0006g03200.t01	Wine grape	cytosol	89.65	76.07
PGSC0003DMT400033011	Potato	cytosol	89.65	76.07
GSMUA_Achr1P14710_001	Banana	cytosol	89.43	75.89
GSMUA_Achr4P16540_001	Banana	cytosol	88.77	75.33
KRH46911	Soybean	endoplasmic reticulum	87.67	74.39
KRH01781	Soybean	nucleus	87.67	74.39
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	87.0	73.83
EER97762	Sorghum	cytosol	86.78	73.64
Zm00001d007192_P001	Maize	cytosol	87.22	73.47
TraesCS6A01G399300.1	Wheat	golgi	84.58	71.78
TraesCS6D01G383500.1	Wheat	unclear	84.58	71.78
HORVU6Hr1G091690.4	Barley	cytosol, plastid	84.8	67.54
Bra010965.1-P	Field mustard	cytosol	28.19	23.93
Bra012506.1-P	Field mustard	cytosol	27.97	23.74
Bra032797.1-P	Field mustard	cytosol	27.97	23.74
Bra020134.1-P	Field mustard	cytosol	25.77	23.08
Bra002337.1-P	Field mustard	cytosol	26.21	22.58
Bra001773.1-P	Field mustard	cytosol	25.77	21.43
Bra035820.1-P	Field mustard	cytosol	25.55	20.86
Bra021300.1-P	Field mustard	cytosol	23.79	20.34
Bra001423.1-P	Field mustard	cytosol	24.89	20.18
Bra022292.1-P	Field mustard	cytosol, plastid	23.57	20.07
Bra038682.1-P	Field mustard	cytosol	24.45	20.0
Bra034807.1-P	Field mustard	cytosol	23.35	19.96
Bra040242.1-P	Field mustard	cytosol	23.57	19.28
Bra001174.1-P	Field mustard	cytosol	23.35	19.1
Bra001094.1-P	Field mustard	cytosol	22.03	18.25
Bra036422.1-P	Field mustard	cytosol	21.81	18.2
Bra031959.1-P	Field mustard	cytosol	21.37	17.83
Bra006584.1-P	Field mustard	cytosol	25.77	15.64
Bra038252.1-P	Field mustard	cytosol	25.55	15.24
Bra035423.1-P	Field mustard	cytosol	6.83	13.84

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.6	Gene3D:3.50.7.10	EnsemblPlantsGene:Bra006338	EnsemblPlants:Bra006338.1	EnsemblPlants:Bra006338.1-P
InterPro:Chap_CCT_zeta	InterPro:Chaperone_TCP-1	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M4CQ49	PFAM:PF00118	PRINTS:PR00304
PANTHER:PTHR11353	PANTHER:PTHR11353:SF21	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02347	UniParc:UPI000253F591	:	:	:	:

Description

AT3G02530 (E=2e-193) | chaperonin, putative

Coordinates

chrA03:-:3083690..3088397

Molecular Weight (calculated)

50530.0 Da

IEP (calculated)

4.949

GRAVY (calculated)

-0.189

Length

454 amino acids

Sequence
(BLAST)

001: MMQQEVCLQI QNPTAIMIAR TAVAQDDISG DGTTSTVIFI GELMKQSERC IDEGMHPRVL VDGFEIAKRA TLQFLDNFKT PVVMGDEPDK EILKMVARTT
101: LRTKLYEGLA DQLTDIVVNS VLCIRKPEEG IDLFMVEIMH MRHKFDVDTR LVEGLVLDHG SRHPDMKRRA ENCHILTCNV SLEYEKSEIN AGFFYSNAEQ
201: REAMVTAERK SVDERVQKII DLKNKVCAGN DNNFVIINQK GIDPPSLDLL AREGIIALRR AKRRNMERLV LACGGEAVNS VDELTPESLG WAGLVYEHVL
301: GEEKYTFVEQ VKNPNSCTIL IKGPNDHTIA QIKDAVRDGL RSVKNTIEDE CVVLRAQLGV EAFANALLVV PKTLAENAGL DTQDVIISLT SEHDKGNVVG
401: LNIEDGEPID PQLAGIFDNY SVKRQLINSG PVIASQLLLV DEVIRAGRNM RKPT

Best Arabidopsis Sequence Match ( AT3G02530.1 )
(BLAST)

001: MSVRVLNPNA EVLNKSAALH MTINAAKGLQ DVLKSNLGPK GTIKMLVGGS GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDDISGDG TTSTVIFIGE
101: LMKQSERCID EGMHPRVLVD GFEIAKRATL QFLDTFKTPV VMGDEPDKEI LKMVARTTLR TKLYEGLADQ LTDIVVNSVL CIRKPQEPID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CHILTCNVSL EYEKSEINAG FFYSNAEQRE AMVTAERRSV DERVQKIIEL KNKVCAGNDN SFVILNQKGI
301: DPPSLDLLAR EGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTPDCLGWA GLVYEHVLGE EKYTFVEQVK NPHSCTILIK GPNDHTIAQI KDAVRDGLRS
401: VKNTLEDECV VLGAGAFEVA ARQHLINEVK KTVQGRAQLG VEAFANALLV VPKTLAENAG LDTQDVIISL TSEHDKGNIV GLDLQDGEPV DPQLAGIFDN
501: YSVKRQLINS GPVIASQLLL VDEVIRAGRN MRKPT

Arabidopsis Description

CCT6AT-complex protein 1 subunit zeta 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M888]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.