Factsheet for PGSC0003DMT400062134

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g063090.2.1	Tomato	nucleus, unclear	99.25	99.25
PGSC0003DMT400033011	Potato	cytosol	96.26	96.26
VIT_14s0006g03200.t01	Wine grape	cytosol	92.71	92.71
GSMUA_Achr1P14710_001	Banana	cytosol	92.15	92.15
Bra008652.1-P	Field mustard	cytosol	91.78	91.6
CDX69477	Canola	cytosol	91.78	91.6
CDY26490	Canola	cytosol	91.78	91.6
AT3G02530.1	Thale cress	cytosol	91.59	91.59
CDX70671	Canola	cytosol	91.59	91.59
CDX78670	Canola	cytosol	91.59	91.59
GSMUA_Achr4P16540_001	Banana	cytosol	91.59	91.59
KRH46911	Soybean	endoplasmic reticulum	91.22	91.22
KRH01781	Soybean	nucleus	91.22	91.22
AT5G16070.1	Thale cress	cytosol	91.03	91.03
CDY51544	Canola	cytosol	90.84	90.84
CDY28697	Canola	cytosol	90.84	90.84
Bra040591.1-P	Field mustard	cytosol	90.84	90.84
Bra006338.1-P	Field mustard	cytosol	76.64	90.31
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	90.28	90.28
EER97762	Sorghum	cytosol	89.53	89.53
Zm00001d007192_P001	Maize	cytosol	89.72	89.05
TraesCS6A01G399300.1	Wheat	golgi	88.04	88.04
TraesCS6D01G383500.1	Wheat	unclear	88.04	88.04
HORVU6Hr1G091690.4	Barley	cytosol, plastid	88.04	82.63
PGSC0003DMT400019727	Potato	cytosol	7.66	29.5
PGSC0003DMT400050534	Potato	cytosol	17.01	28.8
PGSC0003DMT400033155	Potato	cytosol	18.69	28.33
PGSC0003DMT400066954	Potato	cytosol	26.54	26.05
PGSC0003DMT400060294	Potato	cytosol	26.36	25.41
PGSC0003DMT400073555	Potato	cytosol	12.34	25.29
PGSC0003DMT400027968	Potato	cytosol	10.28	25.11
PGSC0003DMT400067201	Potato	cytosol	25.79	24.73
PGSC0003DMT400014441	Potato	plastid	24.86	24.68
PGSC0003DMT400017609	Potato	cytosol	23.93	23.66

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:102578762	MapMan:20.3.1.6	Gene3D:3.50.7.10	InterPro:Chap_CCT_zeta	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	UniProt:M1C8J5	PFAM:PF00118	EnsemblPlantsGene:PGSC0003DMG400024180	PGSC:PGSC0003DMG400024180
EnsemblPlants:PGSC0003DMT400062134	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	PANTHER:PTHR11353	PANTHER:PTHR11353:SF21
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02347	UniParc:UPI00029609EC
RefSeq:XP_006346919.1	SEG:seg	:	:	:	:

Description

TCP domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400024180]

Coordinates

chr2:+:21814966..21821876

Molecular Weight (calculated)

58912.4 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.214

Length

535 amino acids

Sequence
(BLAST)

001: MSVKVLNPNA EVLNKSAALH MNINAAKGLQ DVLKTNLGPK GTIKMLVGGA GDIKLTKDGN TLLKEMQIQN PTAVMIARTA VAQDDTSGDG TTSTVLFIGE
101: LMKQSERCID EGMHPRVLVD GFEIAKRATL QFLEKFKTPV VMGNEPDKEI LKMVARTTLR TKLYESLADQ LTDIVVNSVL CIRKPDEAID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CYILTANVSL EYEKSEVNAG FFYSNAEQRE AMVAAERRSV DERVQKIIDL KNQVCAGNDK NFVVINQKGI
301: DPPSLDQLAR EGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTPECLGWA GLVYEHVLGE EKYTFVENVK NPHSCTILIK GPNDHTIAQI KDAVRDGLRA
401: VKNTIEDEAV ILGAGAFEVA ARQHLINEVK KTVKGRAQLG VEAFGNALLV IPKTLAENSG LDTQDVIIAL TGEHDKGNVV GLNQHTGEPV DPQMEGIFDN
501: YSVKRQIVNS GPVIASQLLL VDEVIRAGRN MRKPT

Best Arabidopsis Sequence Match ( AT3G02530.1 )
(BLAST)

001: MSVRVLNPNA EVLNKSAALH MTINAAKGLQ DVLKSNLGPK GTIKMLVGGS GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDDISGDG TTSTVIFIGE
101: LMKQSERCID EGMHPRVLVD GFEIAKRATL QFLDTFKTPV VMGDEPDKEI LKMVARTTLR TKLYEGLADQ LTDIVVNSVL CIRKPQEPID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CHILTCNVSL EYEKSEINAG FFYSNAEQRE AMVTAERRSV DERVQKIIEL KNKVCAGNDN SFVILNQKGI
301: DPPSLDLLAR EGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTPDCLGWA GLVYEHVLGE EKYTFVEQVK NPHSCTILIK GPNDHTIAQI KDAVRDGLRS
401: VKNTLEDECV VLGAGAFEVA ARQHLINEVK KTVQGRAQLG VEAFANALLV VPKTLAENAG LDTQDVIISL TSEHDKGNIV GLDLQDGEPV DPQLAGIFDN
501: YSVKRQLINS GPVIASQLLL VDEVIRAGRN MRKPT

Arabidopsis Description

CCT6AT-complex protein 1 subunit zeta 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M888]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.