Factsheet for GSMUA_Achr1P14710_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P16540_001	Banana	cytosol	97.57	97.57
VIT_14s0006g03200.t01	Wine grape	cytosol	95.51	95.51
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	93.64	93.64
Solyc02g085790.2.1	Tomato	extracellular	92.52	92.52
Solyc02g063090.2.1	Tomato	nucleus, unclear	92.15	92.15
PGSC0003DMT400062134	Potato	cytosol	92.15	92.15
KRH46911	Soybean	endoplasmic reticulum	92.15	92.15
KRH01781	Soybean	nucleus	92.15	92.15
PGSC0003DMT400033011	Potato	cytosol	91.96	91.96
EER97762	Sorghum	cytosol	91.96	91.96
Zm00001d007192_P001	Maize	cytosol	92.34	91.65
AT3G02530.1	Thale cress	cytosol	91.4	91.4
Bra040591.1-P	Field mustard	cytosol	91.22	91.22
CDY51544	Canola	cytosol	91.03	91.03
CDY28697	Canola	cytosol	91.03	91.03
AT5G16070.1	Thale cress	cytosol	90.65	90.65
CDY26490	Canola	cytosol	90.65	90.49
CDX69477	Canola	cytosol	90.65	90.49
Bra008652.1-P	Field mustard	cytosol	90.65	90.49
CDX70671	Canola	cytosol	90.47	90.47
CDX78670	Canola	cytosol	90.47	90.47
Bra006338.1-P	Field mustard	cytosol	75.89	89.43
TraesCS6A01G399300.1	Wheat	golgi	89.35	89.35
TraesCS6D01G383500.1	Wheat	unclear	89.35	89.35
HORVU6Hr1G091690.4	Barley	cytosol, plastid	88.97	83.51
GSMUA_Achr2P01800_001	Banana	cytosol	27.48	27.89
GSMUA_Achr3P20910_001	Banana	cytosol	17.57	27.17
GSMUA_Achr6P06770_001	Banana	cytosol	24.49	27.12
GSMUA_AchrUn_...	Banana	cytosol	26.92	26.92
GSMUA_Achr3P24440_001	Banana	peroxisome	26.92	26.18
GSMUA_Achr11P...	Banana	cytosol	26.73	25.91
GSMUA_Achr6P23290_001	Banana	cytosol	25.79	24.78
GSMUA_Achr8P04580_001	Banana	cytosol	25.05	24.63
GSMUA_Achr5P09040_001	Banana	cytosol	25.61	24.6
GSMUA_Achr2P21510_001	Banana	cytosol	23.55	24.56
GSMUA_Achr3P25570_001	Banana	cytosol	24.67	24.26
GSMUA_Achr6P09540_001	Banana	cytosol	16.64	24.25
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	11.78	22.99
GSMUA_Achr2P01090_001	Banana	cytosol	15.51	22.99
GSMUA_Achr8P16590_001	Banana	plastid	25.98	22.94
GSMUA_Achr9P07660_001	Banana	cytosol	0.19	6.25

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.6	Gene3D:3.50.7.10	InterPro:Chap_CCT_zeta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr1G14710_001	EnsemblPlants:GSMUA_Achr1P14710_001	EnsemblPlants:GSMUA_Achr1T14710_001
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M0RZX9	PFAM:PF00118
PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	PANTHER:PTHR11353	PANTHER:PTHR11353:SF21	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02347	UniParc:UPI00029606F9	SEG:seg

Description

T-complex protein 1 subunit zeta [Source:GMGC_GENE;Acc:GSMUA_Achr1G14710_001]

Coordinates

chr1:-:11120711..11131886

Molecular Weight (calculated)

59174.8 Da

IEP (calculated)

6.654

GRAVY (calculated)

-0.219

Length

535 amino acids

Sequence
(BLAST)

001: MSLRVLNPNA EVLNKSAALH MNINAAKGLQ DVLKTNLGPK GTIKMLVGGA GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDETSGDG TTSTVLFIGE
101: LMKQSERYID EGMHPRVLVD GFEIAKRATL EFLEKFKTPV VMGDTPDKEI LKMVARTTLR TKLYEGLADQ LTDIVVNGVL CIRKPDEPID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CYILTCNVSL EYEKSEINAG FFYSNAEQRE KMVAAERRQV DERVKKIIEL KNKVCSGNDN NFVVINQKGI
301: DPPSLDLLAR AGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTEDCLGWA GLVYEHILGE EKYTFVENVK NPRSCTILIK GPNDHTIAQI KDAVRDGLRS
401: VKNTLEDEAV VLGAGAFEVA ARQHLVTNIK KTVQGRAQLG VEAFADALLV VPKTLAENSG LDTQDVIIAL TGEHDRGNIV GLNHHTGEPI DPQMEGIFDN
501: YSVKRQIINS GPVIASQLLL VDEVIRAGRN MRKPT

Best Arabidopsis Sequence Match ( AT3G02530.1 )
(BLAST)

001: MSVRVLNPNA EVLNKSAALH MTINAAKGLQ DVLKSNLGPK GTIKMLVGGS GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDDISGDG TTSTVIFIGE
101: LMKQSERCID EGMHPRVLVD GFEIAKRATL QFLDTFKTPV VMGDEPDKEI LKMVARTTLR TKLYEGLADQ LTDIVVNSVL CIRKPQEPID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CHILTCNVSL EYEKSEINAG FFYSNAEQRE AMVTAERRSV DERVQKIIEL KNKVCAGNDN SFVILNQKGI
301: DPPSLDLLAR EGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTPDCLGWA GLVYEHVLGE EKYTFVEQVK NPHSCTILIK GPNDHTIAQI KDAVRDGLRS
401: VKNTLEDECV VLGAGAFEVA ARQHLINEVK KTVQGRAQLG VEAFANALLV VPKTLAENAG LDTQDVIISL TSEHDKGNIV GLDLQDGEPV DPQLAGIFDN
501: YSVKRQLINS GPVIASQLLL VDEVIRAGRN MRKPT

Arabidopsis Description

CCT6AT-complex protein 1 subunit zeta 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M888]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.