Factsheet for GSMUA_AchrUn_randomP20660_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
golgi 1
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	mitochondrion
EpiLoc:	golgi
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P01800_001
GSMUA_Achr3P24440_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24510.1	GSMUA_Achr2P01800_001	AT5G20890.1	21798944
AT1G24510.1	GSMUA_Achr3P24440_001	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P06770_001	Banana	cytosol	85.61	94.82
GSMUA_Achr9P07660_001	Banana	cytosol	2.8	93.75
PGSC0003DMT400073555	Potato	cytosol	45.42	93.1
Solyc05g013990.2.1	Tomato	nucleus	90.65	90.65
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	90.47	90.47
PGSC0003DMT400027968	Potato	cytosol	37.01	90.41
EER88530	Sorghum	cytosol	90.28	90.28
EER97880	Sorghum	cytosol	90.28	90.28
KRH31372	Soybean	nucleus	89.35	89.35
KRG97508	Soybean	cytosol, nucleus	89.16	89.16
TraesCS7B01G269300.2	Wheat	cytosol	89.16	89.16
TraesCS7A01G358400.1	Wheat	cytosol, unclear	89.16	89.16
TraesCS7D01G364400.2	Wheat	cytosol	88.78	88.78
TraesCS1D01G216600.1	Wheat	cytosol	88.41	88.41
HORVU7Hr1G088080.1	Barley	cytosol	88.78	88.29
TraesCS1A01G213800.1	Wheat	cytosol	65.05	88.1
Zm00001d018694_P002	Maize	cytosol	90.09	87.96
TraesCS1B01G227600.1	Wheat	cytosol	87.85	87.85
VIT_12s0028g00350.t01	Wine grape	cytosol	87.85	87.85
Zm00001d007960_P001	Maize	cytosol	89.91	87.77
CDY36138	Canola	cytosol	87.66	87.66
CDY54836	Canola	cytosol	87.48	87.48
CDY51593	Canola	cytosol	87.48	87.31
Bra010965.1-P	Field mustard	cytosol	87.29	87.29
Bra012506.1-P	Field mustard	cytosol	87.29	87.29
CDY03881	Canola	cytosol	87.29	87.29
AT1G24510.1	Thale cress	cytosol	87.1	87.1
Bra032797.1-P	Field mustard	cytosol	87.1	87.1
CDX84951	Canola	cytosol	86.92	86.92
HORVU1Hr1G054530.14	Barley	cytosol	44.67	81.02
VIT_01s0137g00250.t01	Wine grape	cytosol	91.4	73.87
GSMUA_Achr3P20910_001	Banana	cytosol	27.1	41.91
GSMUA_Achr2P01800_001	Banana	cytosol	33.08	33.59
GSMUA_Achr6P09540_001	Banana	cytosol	22.62	32.97
GSMUA_Achr11P...	Banana	cytosol	32.71	31.7
GSMUA_Achr3P24440_001	Banana	peroxisome	32.34	31.45
GSMUA_Achr5P09040_001	Banana	cytosol	31.21	29.98
GSMUA_Achr6P23290_001	Banana	cytosol	31.03	29.8
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	14.95	29.2
GSMUA_Achr2P01090_001	Banana	cytosol	19.63	29.09
GSMUA_Achr2P21510_001	Banana	cytosol	27.66	28.85
GSMUA_Achr8P16590_001	Banana	plastid	31.03	27.39
GSMUA_Achr4P16540_001	Banana	cytosol	27.1	27.1
GSMUA_Achr1P14710_001	Banana	cytosol	26.92	26.92
GSMUA_Achr3P25570_001	Banana	cytosol	25.42	25.0
GSMUA_Achr8P04580_001	Banana	cytosol	25.42	25.0

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.5	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_epsi	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_AchrUn_randomG20660_001	EnsemblPlants:GSMUA_AchrUn_randomP20660_001
EnsemblPlants:GSMUA_AchrUn_randomT20660_001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M0UAX5
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353
PANTHER:PTHR11353:SF178	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02343
UniParc:UPI000294FCB1	:	:	:	:	:

Description

T-complex protein 1 subunit epsilon [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG20660_001]

Coordinates

chrchrUn_random:+:99804324..99812872

Molecular Weight (calculated)

59132.9 Da

IEP (calculated)

5.746

GRAVY (calculated)

-0.134

Length

535 amino acids

Sequence
(BLAST)

001: MALAFDEYGR PFIIIKEQGQ KARLRGLEAQ KANISAGKAV ARILRTSLGP KGMDKMLQSP DGDVIVTNDG ATILEQMDVD NQIGKLMVEL SRSQDYEIGD
101: GTTGVVVLAG ALLEQAEKLL ERGIHPIRIA EGYEMASRLA VDHLEHISQK FEFSVTNIEP LVQTCMTTLS SKIVNRCKRA LAEIAVKAVL AVADLERKDV
201: NLELIKVEGK VGGKLEDTEL IYGIVVDKDM SHPQMPKRIE EAKIAILTCP FEPPKPKTKH KIDIDTVEKF QTLRQQEQKY FDDMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQDLTDEKLG KAGLVREKSF GTTKDRMLYI EHCANSRAVT IFIRGGNKMM IDETKRSLHD
401: ALCVARNLIR SNSIVYGGGS AELSCSIAVE AAADKYPGVE QYAIRSFAEA LDFIPMALAE NCGLPPIDTV TAVKSQQIKE NNPYCGIDCN DVGTNNMMEQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI TPSAY

Best Arabidopsis Sequence Match ( AT1G24510.1 )
(BLAST)

001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDITITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILIDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGVVREKSF GTTKERMLYI EHCANSKAVT VFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVYGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY

Arabidopsis Description

CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.