Factsheet for Zm00001d007960_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008369_P001
Zm00001d040257_P001
Zm00001d040688_P001
Zm00001d052882_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24510.1	Zm00001d008369_P001	AT5G20890.1	21798944
AT1G24510.1	Zm00001d040257_P001	AT5G20890.1	21798944
AT1G24510.1	Zm00001d040688_P001	AT5G20890.1	21798944
AT1G24510.1	Zm00001d052882_P001	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018694_P002	Maize	cytosol	98.36	98.36
EER97880	Sorghum	cytosol	95.99	98.32
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	93.07	95.33
PGSC0003DMT400073555	Potato	cytosol	44.53	93.49
GSMUA_Achr6P06770_001	Banana	cytosol	80.84	91.72
TraesCS7B01G269300.2	Wheat	cytosol	89.23	91.4
TraesCS7A01G358400.1	Wheat	cytosol, unclear	89.23	91.4
Solyc05g013990.2.1	Tomato	nucleus	89.23	91.4
HORVU7Hr1G088080.1	Barley	cytosol	89.42	91.08
TraesCS7D01G364400.2	Wheat	cytosol	88.87	91.03
TraesCS1A01G213800.1	Wheat	cytosol	65.51	90.89
TraesCS1D01G216600.1	Wheat	cytosol	88.14	90.28
KRH31372	Soybean	nucleus	87.96	90.09
PGSC0003DMT400027968	Potato	cytosol	35.95	89.95
GSMUA_AchrUn_...	Banana	cytosol	87.77	89.91
KRG97508	Soybean	cytosol, nucleus	87.77	89.91
TraesCS1B01G227600.1	Wheat	cytosol	87.59	89.72
CDY36138	Canola	cytosol	86.31	88.41
Bra032797.1-P	Field mustard	cytosol	86.31	88.41
CDY51593	Canola	cytosol	86.31	88.25
CDY03881	Canola	cytosol	86.13	88.22
Bra012506.1-P	Field mustard	cytosol	86.13	88.22
CDX84951	Canola	cytosol	86.13	88.22
CDY54836	Canola	cytosol	86.13	88.22
Bra010965.1-P	Field mustard	cytosol	85.95	88.04
AT1G24510.1	Thale cress	cytosol	85.77	87.85
VIT_12s0028g00350.t01	Wine grape	cytosol	85.04	87.1
HORVU1Hr1G054530.14	Barley	cytosol	44.34	82.37
VIT_01s0137g00250.t01	Wine grape	cytosol	88.14	72.96
Zm00001d051742_P001	Maize	plastid	36.31	37.2
Zm00001d027371_P001	Maize	plasma membrane	35.77	36.64
Zm00001d008369_P001	Maize	cytosol, nucleus	33.21	34.67
Zm00001d040257_P001	Maize	cytosol	33.21	34.67
Zm00001d052056_P005	Maize	plasma membrane	31.2	31.38
Zm00001d018349_P001	Maize	cytosol	30.66	30.83
Zm00001d028183_P002	Maize	cytosol	31.2	30.65
Zm00001d053857_P002	Maize	cytosol	29.38	28.75
Zm00001d007192_P001	Maize	cytosol	26.64	27.09
Zm00001d053553_P002	Maize	cytosol	31.02	26.07
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	24.09	24.09
Zm00001d007508_P005	Maize	cytosol	24.45	23.39
Zm00001d040688_P001	Maize	cytosol	11.86	23.13
Zm00001d052882_P001	Maize	plastid	16.79	18.15

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100282671	MapMan:20.3.1.5	Gene3D:3.30.260.10	Gene3D:3.50.7.10	UniProt:A0A1D6FAH0
InterPro:Chap_CCT_epsi	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	ProteinID:ONM28070.1	PFAM:PF00118
PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF178
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02343	UniParc:UPI0008440B8E
EnsemblPlantsGene:Zm00001d007960	EnsemblPlants:Zm00001d007960_P001	EnsemblPlants:Zm00001d007960_T001	SEG:seg	:	:

Description

T-complex protein 1 subunit epsilon

Coordinates

chr2:-:244109455..244114715

Molecular Weight (calculated)

60580.6 Da

IEP (calculated)

5.899

GRAVY (calculated)

-0.157

Length

548 amino acids

Sequence
(BLAST)

001: MALAFDEFGR PFIILREQEK KTRLRGLDAQ KANIASAKAV ARILRTSLGP KGMDKMLQSP DGDVIITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAEKLL ERGIHPIRVA EGYEMASKVA FDHLEHISEK FEFSADNIEP LVQTCMTTLS SKIVNRCKRA LAEIAVKAVL AVADLERKDV
201: NLDLIKVEGK VGGKLEDTEL VYGIIVDKDM SHPQMPKRIE DAKIAILTCP FEPPKPKTKH KVDIDTVEKF QTLREQEQKY FDEMVQKCKV KTRLLLVLQN
301: INDAGATLVI CQWGFDDEAN HLLMHRNLPA VRWVGGVELE LIAIATGGRI VPRFQELSPE KLGKAGLVRE KSFGTTKDRM LYIEKCANSR AVTIFIRGGN
401: KMMIEETKRS LHDALCVARN LIRNNSIVYG GGSAEISCSI AVETAADRHP GVEQYAIRSF ADALDAVPLA LAENSGLSPI DTLTAVKAQQ VKESNPHCGI
501: DCNDVGTTDM KEQNVFETLI GKQQQILLAT QVVKMILKID DVISPSEY

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.