Factsheet for Bra012506.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002337.1-P
Bra006584.1-P
Bra020134.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24510.1	Bra002337.1-P	AT5G20890.1	21798944
AT1G24510.1	Bra006584.1-P	AT5G20890.1	21798944
AT1G24510.1	Bra020134.1-P	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51593	Canola	cytosol	99.81	99.63
CDY03881	Canola	cytosol	99.44	99.44
Bra032797.1-P	Field mustard	cytosol	98.88	98.88
AT1G24510.1	Thale cress	cytosol	98.5	98.5
Bra010965.1-P	Field mustard	cytosol	98.32	98.32
Solyc05g013990.2.1	Tomato	nucleus	91.59	91.59
PGSC0003DMT400073555	Potato	cytosol	44.49	91.19
KRH31372	Soybean	nucleus	90.28	90.28
KRG97508	Soybean	cytosol, nucleus	90.09	90.09
GSMUA_Achr6P06770_001	Banana	cytosol	80.75	89.44
EER88530	Sorghum	cytosol	89.16	89.16
EER97880	Sorghum	cytosol	89.16	89.16
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	88.41	88.41
TraesCS1A01G213800.1	Wheat	cytosol	64.49	87.34
GSMUA_AchrUn_...	Banana	cytosol	87.29	87.29
TraesCS7A01G358400.1	Wheat	cytosol, unclear	87.1	87.1
VIT_12s0028g00350.t01	Wine grape	cytosol	87.1	87.1
TraesCS7D01G364400.2	Wheat	cytosol	87.1	87.1
TraesCS7B01G269300.2	Wheat	cytosol	87.1	87.1
HORVU7Hr1G088080.1	Barley	cytosol	87.29	86.8
Zm00001d018694_P002	Maize	cytosol	88.6	86.5
TraesCS1D01G216600.1	Wheat	cytosol	86.36	86.36
Zm00001d007960_P001	Maize	cytosol	88.22	86.13
TraesCS1B01G227600.1	Wheat	cytosol	85.79	85.79
HORVU1Hr1G054530.14	Barley	cytosol	43.36	78.64
VIT_01s0137g00250.t01	Wine grape	cytosol	90.65	73.26
Bra021300.1-P	Field mustard	cytosol	36.45	36.72
Bra022292.1-P	Field mustard	cytosol, plastid	36.07	36.21
Bra020134.1-P	Field mustard	cytosol	31.03	32.74
Bra002337.1-P	Field mustard	cytosol	31.4	31.88
Bra001773.1-P	Field mustard	cytosol	31.78	31.14
Bra035820.1-P	Field mustard	cytosol	31.59	30.4
Bra001174.1-P	Field mustard	cytosol	31.4	30.27
Bra040242.1-P	Field mustard	cytosol	31.21	30.09
Bra001423.1-P	Field mustard	cytosol	30.47	29.11
Bra008652.1-P	Field mustard	cytosol	29.16	29.1
Bra038682.1-P	Field mustard	cytosol	29.91	28.83
Bra034807.1-P	Field mustard	cytosol	28.6	28.81
Bra040591.1-P	Field mustard	cytosol	28.6	28.6
Bra006338.1-P	Field mustard	cytosol	23.74	27.97
Bra035423.1-P	Field mustard	cytosol	9.91	23.66
Bra001094.1-P	Field mustard	cytosol	23.93	23.36
Bra036422.1-P	Field mustard	cytosol	23.74	23.35
Bra031959.1-P	Field mustard	cytosol	23.18	22.79
Bra006584.1-P	Field mustard	cytosol	31.4	22.46
Bra038252.1-P	Field mustard	cytosol	31.78	22.34

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.5	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EnsemblPlantsGene:Bra012506	EnsemblPlants:Bra012506.1
EnsemblPlants:Bra012506.1-P	InterPro:Chap_CCT_epsi	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M4D7P6
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353
PANTHER:PTHR11353:SF178	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02343
UniParc:UPI0002541231	:	:	:	:	:

Description

AT1G24510 (E=7e-305) | T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative

Coordinates

chrA07:-:7123133..7125714

Molecular Weight (calculated)

59391.9 Da

IEP (calculated)

5.238

GRAVY (calculated)

-0.193

Length

535 amino acids

Sequence
(BLAST)

001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDVTITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERISQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGNLEDTEL IYGILVDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGMVREKSF GTTKERMLYI EHCANSKAVT IFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVFGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQLKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY

Best Arabidopsis Sequence Match ( AT1G24510.1 )
(BLAST)

001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDITITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILIDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGVVREKSF GTTKERMLYI EHCANSKAVT VFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVYGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY

Arabidopsis Description

CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.