Factsheet for Os06t0562600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, cytosol

Predictor Summary:

cytosol 5
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 21255809
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21255809 doi

T Shinano, S Komatsu, T Yoshimura, S Tokutake, FJ Kong, T Watanabe, J Wasaki, M Osaki

National Agriculture and Food Research Organization, National Agricultural Research Center for Hokkaido Region, 1-Hitsujigaoka, Toyohira-ku, Sapporo 062-8555, Japan. shinano@affrc.go.jp

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0619400-01
Os05t0556700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24510.1	Os03t0619400-01	AT5G20890.1	21798944
AT1G24510.1	Os05t0556700-01	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97880	Sorghum	cytosol	95.7	95.7
EER88530	Sorghum	cytosol	94.95	94.95
PGSC0003DMT400073555	Potato	cytosol	45.79	93.87
Zm00001d018694_P002	Maize	cytosol	95.51	93.25
Zm00001d007960_P001	Maize	cytosol	95.33	93.07
TraesCS7B01G269300.2	Wheat	cytosol	92.15	92.15
TraesCS7A01G358400.1	Wheat	cytosol, unclear	92.15	92.15
TraesCS7D01G364400.2	Wheat	cytosol	91.96	91.96
HORVU7Hr1G088080.1	Barley	cytosol	92.34	91.82
Solyc05g013990.2.1	Tomato	nucleus	91.78	91.78
TraesCS1A01G213800.1	Wheat	cytosol	67.66	91.65
TraesCS1D01G216600.1	Wheat	cytosol	91.59	91.59
GSMUA_Achr6P06770_001	Banana	cytosol	82.62	91.51
KRH31372	Soybean	nucleus	91.22	91.22
TraesCS1B01G227600.1	Wheat	cytosol	91.03	91.03
KRG97508	Soybean	cytosol, nucleus	91.03	91.03
GSMUA_AchrUn_...	Banana	cytosol	90.47	90.47
PGSC0003DMT400027968	Potato	cytosol	36.82	89.95
CDY54836	Canola	cytosol	88.6	88.6
CDY36138	Canola	cytosol	88.6	88.6
CDY51593	Canola	cytosol	88.6	88.43
CDY03881	Canola	cytosol	88.41	88.41
Bra012506.1-P	Field mustard	cytosol	88.41	88.41
Bra010965.1-P	Field mustard	cytosol	88.22	88.22
CDX84951	Canola	cytosol	88.04	88.04
VIT_12s0028g00350.t01	Wine grape	cytosol	88.04	88.04
Bra032797.1-P	Field mustard	cytosol	88.04	88.04
AT1G24510.1	Thale cress	cytosol	88.04	88.04
HORVU1Hr1G054530.14	Barley	cytosol	45.61	82.71
VIT_01s0137g00250.t01	Wine grape	cytosol	91.4	73.87
Os10t0514600-01	Rice	plasma membrane	37.38	36.97
Os02t0332200-01	Rice	plasma membrane	36.82	36.89
Os03t0619400-01	Rice	plasma membrane	33.64	34.29
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	32.71	32.11
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	31.96	30.65
Os02t0247200-01	Rice	cytosol	31.4	30.05
Os05t0556700-01	Rice	cytosol, plasma membrane	17.38	28.35
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	27.29	27.29
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	25.42	24.91
Os06t0687700-01	Rice	plasma membrane	13.83	24.5

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.5	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EntrezGene:4341310	EMBL:AK067114
ProteinID:BAD53747.1	ProteinID:BAF19790.1	ProteinID:BAS98258.1	InterPro:Chap_CCT_epsi	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832
GO:GO:0005886	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009506	GO:GO:0009987
GO:GO:0016020	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EnsemblPlantsGene:Os06g0562600	EnsemblPlants:Os06t0562600-01	PFAM:PF00118
PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF178
UniProt:Q5Z907	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02343
UniParc:UPI0000446E59	RefSeq:XP_015643863.1	SEG:seg	:	:	:

Description

Similar to T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon) (TCP-K36). (Os06t0562600-01)

Coordinates

chr6:-:21598246..21602635

Molecular Weight (calculated)

59134.7 Da

IEP (calculated)

5.861

GRAVY (calculated)

-0.162

Length

535 amino acids

Sequence
(BLAST)

001: MALAFDEFGR PFIILREQEK KSRLRGLDAQ KANIAAGKAV ARILRTSLGP KGMDKMLQSP DGDVTITNDG ATILEQMDVD NQIAKLMVEL SCSQDYEIGD
101: GTTGVVVMAG SLLEQAEKLL ERGIHPIRIA EGYELASRIA FDHLEHISHK FEFSATNIEP LVQTCMTTLS SKIVNRCKRT LAEIAVKAVL AVADLERKDV
201: NLDLIKVEGK VGGKLEDTEL VYGIIVDKDM SHPQMPKRIE DAKIAILTCP FEPPKPKTKH KVDIDTVEKF QMLREQEQKY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELSPEKLG KAGIVREKSF GTTKDRMLYI EQCANSRAVT IFIRGGNKMM IEETKRSLHD
401: ALCVARNLIR NNSIVYGGGS AEISCSVAVE AAADRYPGVE QYAIRSFADA LDAIPLALAE NSGLSPIDTL TAVKSQQVKE SNPHCGIDCN DVGTNHMKEQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SPSDY

Best Arabidopsis Sequence Match ( AT1G24510.1 )
(BLAST)

001: MALAFDEFGR PFIILREQDQ KTRLRGIDAQ KANIAAGKAV ARILRSSLGP KGMDKMLQGP DGDITITNDG ATILEQMDVD NQIAKLMVEL SRSQDYEIGD
101: GTTGVVVMAG ALLEQAERQL DRGIHPIRIA EGYEMASRVA VEHLERIAQK FEFDVNNYEP LVQTCMTTLS SKIVNRCKRS LAEIAVKAVL AVADLERRDV
201: NLDLIKVEGK VGGKLEDTEL IYGILIDKDM SHPQMPKQIE DAHIAILTCP FEPPKPKTKH KVDIDTVEKF ETLRKQEQQY FDEMVQKCKD VGATLVICQW
301: GFDDEANHLL MHRNLPAVRW VGGVELELIA IATGGRIVPR FQELTPEKLG KAGVVREKSF GTTKERMLYI EHCANSKAVT VFIRGGNKMM IEETKRSIHD
401: ALCVARNLIR NKSIVYGGGA AEIACSLAVD AAADKYPGVE QYAIRAFAEA LDSVPMALAE NSGLQPIETL SAVKSQQIKE NIPFYGIDCN DVGTNDMREQ
501: NVFETLIGKQ QQILLATQVV KMILKIDDVI SNSEY

Arabidopsis Description

CCT5T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.