Factsheet for Os04t0551800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05938	Sorghum	cytosol	97.43	97.43
Zm00001d052056_P005	Maize	plasma membrane	97.25	97.25
Zm00001d018349_P001	Maize	cytosol	96.51	96.51
HORVU1Hr1G052730.26	Barley	cytosol	67.16	94.33
TraesCS1D01G208500.1	Wheat	cytosol	85.69	93.78
TraesCS1A01G205200.1	Wheat	cytosol	93.58	93.58
TraesCS7B01G124100.1	Wheat	cytosol, golgi, unclear	93.21	93.21
TraesCS7A01G062100.1	Wheat	cytosol	92.48	92.48
TraesCS7A01G217200.1	Wheat	cytosol	92.48	92.48
TraesCS7D01G056800.1	Wheat	cytosol	92.48	92.48
TraesCS1B01G218800.1	Wheat	cytosol	80.0	92.37
TraesCS4A01G427500.1	Wheat	cytosol, unclear	92.11	92.11
VIT_15s0021g02230.t01	Wine grape	cytosol	91.19	91.03
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	90.46	90.46
KRH59103	Soybean	nucleus	90.46	90.46
TraesCS7D01G218500.2	Wheat	cytosol	92.84	88.62
Solyc01g090750.2.1	Tomato	nucleus	87.34	87.34
AT3G20050.1	Thale cress	cytosol	87.16	87.16
CDY25374	Canola	cytosol	87.16	87.16
CDY42227	Canola	cytosol	86.97	86.97
CDY24564	Canola	cytosol	86.97	86.97
PGSC0003DMT400066954	Potato	cytosol	86.97	86.97
CDY36063	Canola	cytosol	86.24	86.24
CDX82264	Canola	cytosol	86.06	86.06
Bra001773.1-P	Field mustard	cytosol	86.06	85.9
Bra035820.1-P	Field mustard	cytosol	86.97	85.25
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	42.75	85.04
CDY33444	Canola	cytosol	86.79	84.01
HORVU7Hr1G044070.2	Barley	cytosol	87.34	83.36
Bra038252.1-P	Field mustard	cytosol	86.97	62.29
Os03t0619400-01	Rice	plasma membrane	34.5	35.81
Os06t0562600-01	Rice	cytosol, extracellular, plasma membrane	32.11	32.71
Os02t0332200-01	Rice	plasma membrane	30.83	31.46
Os06t0687700-01	Rice	plasma membrane	17.43	31.46
Os10t0514600-01	Rice	plasma membrane	31.01	31.24
Os05t0556700-01	Rice	cytosol, plasma membrane	18.72	31.1
Os02t0247200-01	Rice	cytosol	29.72	28.98
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	29.54	28.85
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	27.52	27.47
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	26.05	26.54

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EntrezGene:4336600	EMBL:AK121568
ProteinID:BAF15414.1	ProteinID:BAS90387.1	ProteinID:CAE01686.2	InterPro:Chap_CCT_alpha	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
InterPro:Cpn60/TCP-1	ProteinID:EEE61458.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	EnsemblPlantsGene:Os04g0551800	EnsemblPlants:Os04t0551800-01	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750
ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF177	UniProt:Q7FAT6	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02340	UniParc:UPI000021C6FD	RefSeq:XP_015637151.1
SEG:seg	:	:	:	:	:

Description

Similar to T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha). (Os04t0551800-01)

Coordinates

chr4:+:27638063..27643857

Molecular Weight (calculated)

59235.7 Da

IEP (calculated)

6.106

GRAVY (calculated)

-0.065

Length

545 amino acids

Sequence
(BLAST)

001: MAITAQTPDI LGERQSGQDV RTQNVVACQA VANIVKSSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIIA
101: AELLKRGNDL VRNKIHPTSI ISGYRLAMRE ACKYVEEKLA VKVDKLGKDS LINCAKTSMS SKLINSDSDF FANLVVDAVQ AVKTTNAKGE VKYPIKSINI
201: LKAHGKSAKD SYLLNGYALN TGRAAQGMPT RVTPARIACL DFNLQKTKMQ LGVQVLVTDP RELEKIRQRE SDITKERIEK ILKAGANVVL TTKGIDDMSL
301: KYFVEAGAIA VRRVRKEDLR HVAKATGATM VSTFADMEGE ETFDSSFLGH ADEVVEERIA DDDVILVKGT KNTSAVSIIL RGANDFMLDE IDRSLHDALC
401: IVKRTLESNM VVAGGGAVEA ALSVYLENLA TTLGSREQLA IAEFAESLLI IPKVLSVNAA KDATELVAKL RAYHHTAQTK ADKQHFSSMG LDLSKGIIRN
501: NLEYGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLTKEE SGNEE

Best Arabidopsis Sequence Match ( AT3G20050.1 )
(BLAST)

001: MSISAQNPDI SGDRQSGQDV RTQNVMACQA VSNIVKTSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE SCKYIEEKLV TKVEKLGKVP LINCAKTSMS SKLISGDSDF FANLVVEAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLNGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKEDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA DDDVILIKGT KTSSAVSLIL RGANDYMLDE MERALHDALC
401: IVKRTLESNT VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFADALLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHYSSMG LDLVNGTIRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKDE SQGEE

Arabidopsis Description

CCT1T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P28769]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.