Factsheet for TraesCS1B01G218800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G208500.1	Wheat	cytosol	85.81	81.33
TraesCS1A01G205200.1	Wheat	cytosol	93.64	81.1
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	92.37	80.0
Zm00001d052056_P005	Maize	plasma membrane	91.31	79.08
EES05938	Sorghum	cytosol	90.89	78.72
TraesCS7B01G124100.1	Wheat	cytosol, golgi, unclear	90.47	78.35
Zm00001d018349_P001	Maize	cytosol	90.04	77.98
HORVU1Hr1G052730.26	Barley	cytosol	62.29	75.77
VIT_15s0021g02230.t01	Wine grape	cytosol	86.23	74.54
KRH59103	Soybean	nucleus	85.59	74.13
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	85.59	74.13
Solyc01g090750.2.1	Tomato	nucleus	84.32	73.03
PGSC0003DMT400066954	Potato	cytosol	84.11	72.84
AT3G20050.1	Thale cress	cytosol	84.11	72.84
CDY42227	Canola	cytosol	83.9	72.66
CDY25374	Canola	cytosol	83.9	72.66
CDY24564	Canola	cytosol	83.69	72.48
CDY36063	Canola	cytosol	82.84	71.74
CDX82264	Canola	cytosol	82.84	71.74
Bra001773.1-P	Field mustard	cytosol	82.84	71.61
Bra035820.1-P	Field mustard	cytosol	83.69	71.04
CDY33444	Canola	cytosol	83.9	70.34
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	34.75	59.85
Bra038252.1-P	Field mustard	cytosol	83.9	52.04
TraesCS3B01G595300.1	Wheat	cytosol	10.17	35.56
TraesCS4B01G250200.1	Wheat	cytosol	34.75	32.8
TraesCS5B01G341900.1	Wheat	cytosol	36.02	32.02
TraesCS6B01G159800.1	Wheat	cytosol	34.32	29.08
TraesCS1B01G227600.1	Wheat	cytosol	31.57	27.85
TraesCS7B01G269300.2	Wheat	cytosol	30.93	27.29
TraesCS7B01G068100.1	Wheat	golgi, unclear	30.72	27.15
TraesCS4B01G165400.1	Wheat	cytosol	28.18	24.63
TraesCS6B01G010900.1	Wheat	mitochondrion, plastid	27.54	24.48
TraesCS6B01G391500.1	Wheat	mitochondrion	26.91	24.33
TraesCS7B01G237000.1	Wheat	cytosol	29.03	24.25

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_alpha	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304
ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF177	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02340	EnsemblPlantsGene:TraesCS1B01G218800	EnsemblPlants:TraesCS1B01G218800.1
TIGR:cd03335	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:396145230..396159507

Molecular Weight (calculated)

51086.1 Da

IEP (calculated)

6.422

GRAVY (calculated)

0.002

Length

472 amino acids

Sequence
(BLAST)

001: MAITAQTPDI LGERQSGQDV RMQNVVGCQA VANIVKSSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPVAQVLVE LAELQDREVG DGTTSVVLIA
101: AELLKGANEL ERNKIHPTSI ISGYRLAMCE ACKYVEEKLS VKVDKLGKAS LVNCAKTSMS SKLIHNDSDF FANLVVEALQ AVKTTNAKGE LKYPIKSINI
201: LKAHGKSARK SYLLNGYALN TGRTAQGMPT KVMVAKIACL DFNLQKTKMQ MGVQVLVSDT RELGKIRQRE SDITKERIEK ILKAGANVVL TTKGIDDMSL
301: KYFVEAGAIA VRRVRKEDLR HVAKTTGATM LSTFADMEGE ETFDPSFLGH ADEVVEERIA NDDVILVKGT KNTSAVSIIL RGANDYMLDE IERSLHDALC
401: VVKRTLESNM VVAGGGAVEA ALSVYLENLA TTLGSREQLA IAEFAESLLI IPKVLSVNAA KDATELVAKL RA

Best Arabidopsis Sequence Match ( AT3G11830.1 )
(BLAST)

001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR

Arabidopsis Description

CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.