Factsheet for TraesCS6B01G391500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3B01G595300.1
TraesCS4A01G054800.1
TraesCS4B01G250200.1
TraesCS4D01G250100.1
TraesCS5A01G342600.1
TraesCS5B01G341900.1
TraesCS5D01G347400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18190.1	TraesCS3B01G595300.1	AT5G20890.1	21798944
AT3G18190.1	TraesCS4A01G054800.1	AT5G20890.1	21798944
AT3G18190.1	TraesCS4B01G250200.1	AT5G20890.1	21798944
AT3G18190.1	TraesCS4D01G250100.1	AT5G20890.1	21798944
AT3G18190.1	TraesCS5A01G342600.1	AT5G20890.1	21798944
AT3G18190.1	TraesCS5B01G341900.1	AT5G20890.1	21798944
AT3G18190.1	TraesCS5D01G347400.1	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G164400.1	Wheat	cytosol	90.42	88.39
TraesCS7A01G426400.1	Wheat	unclear	90.42	88.39
TraesCS7B01G068100.1	Wheat	golgi, unclear	89.85	87.83
HORVU7Hr1G034140.1	Barley	plasma membrane	89.85	87.83
EER95631	Sorghum	cytosol	84.67	82.62
Zm00001d051742_P001	Maize	plastid	84.48	82.43
Os02t0332200-01	Rice	plasma membrane	84.1	82.21
Zm00001d027371_P001	Maize	plasma membrane	83.91	81.87
Os10t0514600-01	Rice	plasma membrane	79.69	76.89
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	75.1	73.55
PGSC0003DMT400014441	Potato	plastid	75.29	72.91
Solyc03g118910.1.1	Tomato	plastid	74.9	72.54
Bra021300.1-P	Field mustard	cytosol	73.75	72.5
KRH60476	Soybean	endoplasmic reticulum	73.95	72.42
CDX92212	Canola	cytosol, plastid	73.95	72.42
AT3G18190.1	Thale cress	cytosol, plastid	74.33	72.39
CDY18509	Canola	cytosol	73.56	72.32
CDX95541	Canola	cytosol, plastid	73.95	72.28
CDY24438	Canola	cytosol, plastid	73.75	72.23
KRH41771	Soybean	endoplasmic reticulum, nucleus	73.18	71.67
Bra022292.1-P	Field mustard	cytosol, plastid	73.18	71.67
KRH49364	Soybean	endoplasmic reticulum, nucleus	68.2	69.67
GSMUA_Achr6P09540_001	Banana	cytosol	47.89	68.12
TraesCS7B01G269300.2	Wheat	cytosol	33.14	32.34
TraesCS1B01G227600.1	Wheat	cytosol	32.57	31.78
TraesCS4B01G250200.1	Wheat	cytosol	28.54	29.8
TraesCS5B01G341900.1	Wheat	cytosol	29.12	28.63
TraesCS1B01G218800.1	Wheat	cytosol	24.33	26.91
TraesCS7B01G124100.1	Wheat	cytosol, golgi, unclear	27.39	26.24
TraesCS6B01G159800.1	Wheat	cytosol	27.97	26.21
TraesCS3B01G595300.1	Wheat	cytosol	6.51	25.19
TraesCS7B01G237000.1	Wheat	cytosol	26.63	24.6
TraesCS4B01G165400.1	Wheat	cytosol	23.37	22.59
TraesCS6B01G010900.1	Wheat	mitochondrion, plastid	22.03	21.66

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.4	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_delta	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304
ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF26	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02342	EnsemblPlantsGene:TraesCS6B01G391500	EnsemblPlants:TraesCS6B01G391500.1	TIGR:cd03338	SEG:seg

Description

No Description!

Coordinates

chr6B:-:665736518..665740464

Molecular Weight (calculated)

56853.1 Da

IEP (calculated)

8.715

GRAVY (calculated)

-0.054

Length

522 amino acids

Sequence
(BLAST)

001: MRQIGAPSTS SPRLRRHGRC RHRRRASARK GETYTDTKRR DDVHDANIAS SRGVADAVRT SLSPRGMDKM ISSGDQEPVA RMLAELSHSQ DAVAGDGTTT
101: VVVIAGALLR RAQSILAAGA HPTAAADSLH RLAARAIEVL EGMAIPIELT DRDSLVKSAS TALNSKVVSQ YSGLLAPLAV DAVVSVVDPA HPELLDLRHI
201: RIIKKLGGTV DDTEFVHGLI FDKKASHAAG GPSRIENAKI AVIQFQISPP KTDIEQSVIV SYHAQMDRIL REERNYVLGM VKKIKASGCN VLLIQKSILR
301: DAVTELSLHY LAKAKILVVK DVERDEIEFI TKTLNCLPIA NIEHFREDKL GYADVVEEVS AGDGKIVKIT GIRDMGRTAT VLVPDRSLHD ALCVIRCLVN
401: KRFLIAGGGA PEIEMSMRLA AWSKELHGME SYCIKEFADA LEVIPYTLAE NAGLNPIAIV TELRNRHAKG EKNTGINVRK GQITNILEEN VVQPLLVSTS
501: AISLACECVR MILKIDDIVT AR

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.