Factsheet for TraesCS4A01G054800.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G250200.1	Wheat	cytosol	94.86	99.6
TraesCS4D01G250100.1	Wheat	cytosol	94.67	99.4
TraesCS5A01G342600.1	Wheat	cytosol	98.86	98.3
Os03t0619400-01	Rice	plasma membrane	94.48	94.48
EES00273	Sorghum	cytosol	91.43	94.12
EES00491	Sorghum	cytosol	94.1	94.1
Zm00001d040257_P001	Maize	cytosol	93.71	93.71
HORVU4Hr1G068820.1	Barley	cytosol	99.62	93.39
Zm00001d008369_P001	Maize	cytosol, nucleus	92.19	92.19
GSMUA_Achr2P01800_001	Banana	cytosol	88.95	88.61
Bra020134.1-P	Field mustard	cytosol	85.33	88.36
KRH25193	Soybean	nucleus	88.38	88.05
VIT_18s0001g00480.t01	Wine grape	cytosol	88.57	87.9
KRH30467	Soybean	nucleus	87.81	87.48
CDY71043	Canola	cytosol	52.38	87.3
AT5G20890.1	Thale cress	cytosol	87.62	87.29
CDY72106	Canola	cytosol	35.24	87.26
CDY16573	Canola	cytosol	87.24	86.91
Bra002337.1-P	Field mustard	cytosol	87.24	86.91
CDX70950	Canola	cytosol	87.24	86.91
CDY09085	Canola	cytosol	87.24	86.91
CDY72126	Canola	cytosol	35.05	86.79
CDX92428	Canola	cytosol	87.05	86.72
Solyc11g069000.1.1	Tomato	extracellular	86.67	86.5
GSMUA_Achr3P24440_001	Banana	peroxisome	84.19	80.36
Bra006584.1-P	Field mustard	cytosol	87.05	61.1
CDX88835	Canola	mitochondrion	87.05	60.13
PGSC0003DMT400019727	Potato	cytosol	15.81	59.71
TraesCS7A01G358400.1	Wheat	cytosol, unclear	35.43	34.77
TraesCS1A01G213800.1	Wheat	cytosol	26.1	34.68
TraesCS4A01G427500.1	Wheat	cytosol, unclear	36.0	34.68
TraesCS7A01G062100.1	Wheat	cytosol	35.81	34.5
TraesCS7A01G217200.1	Wheat	cytosol	35.81	34.5
TraesCS1A01G205200.1	Wheat	cytosol	35.62	34.31
TraesCS6A01G131400.1	Wheat	cytosol, golgi, mitochondrion, unclear	36.19	34.11
TraesCS7A01G426400.1	Wheat	unclear	32.95	32.4
TraesCS6A01G399300.1	Wheat	golgi	28.95	28.41
TraesCS7A01G346200.1	Wheat	cytosol	28.0	26.34
TraesCS4A01G164900.2	Wheat	cytosol	25.14	24.26

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.2	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_beta	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304
ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF23	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02341	EnsemblPlantsGene:TraesCS4A01G054800	EnsemblPlants:TraesCS4A01G054800.1
TIGR:cd03336	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:46046269..46049935

Molecular Weight (calculated)

57285.5 Da

IEP (calculated)

5.867

GRAVY (calculated)

-0.128

Length

525 amino acids

Sequence
(BLAST)

001: MERVLKDDAI QEKGERARMA SFVGAMAIAD LVKTTLGPKG MDKILQSTGR GRSVTVTNDG ATILKSLHID NPAAKVLVDI SKVQDDEVGD GTTSVVVLAG
101: ELLREAEKLV NMKIHPMTII AGYRMAAECA RNALLKRTMD NKDNTDKFRS DLMNIAMTTL SSKILSQDKE YFAELAVDAV LRLKGSTNLE SIQILKKPGG
201: SLKDSFLDEG FILDKKIGLG QPKRIENANI LVANTAMDTD KVKIYGARVR VDSMAKVADI EAAEKQKMRE KVEKIIGHGI NCFVNRQLIY NFPEELFADA
301: GILAVEHADF EGIERLALVT GGDIASTFDN PESVKLGHCK LIEEIMIGED RLIHFSGVAM GQACTIVLRG ASEHVLDEAE RSLHDALCVL SQTVTDTRVI
401: YGGGWPEMVM SKEVDELARK TPGKKSHAID AFSRALQAIP TIIADNAGLD SAELISQLRA EHHKENSTAG IDVISGGLGD MQKRGICEAF KVKQAIVLSA
501: TEAAEMILRV DEIITCAPRR REDRM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.