Factsheet for Zm00001d040257_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00491	Sorghum	cytosol	97.33	97.33
EES00273	Sorghum	cytosol	94.48	97.25
Zm00001d008369_P001	Maize	cytosol, nucleus	96.76	96.76
Os03t0619400-01	Rice	plasma membrane	94.1	94.1
TraesCS4A01G054800.1	Wheat	cytosol, unclear	93.71	93.71
TraesCS4D01G250100.1	Wheat	cytosol	89.14	93.6
TraesCS5A01G342600.1	Wheat	cytosol	94.1	93.56
TraesCS4B01G250200.1	Wheat	cytosol	88.95	93.4
TraesCS5D01G347400.1	Wheat	cytosol	93.71	93.18
TraesCS5B01G341900.1	Wheat	cytosol	93.9	92.84
HORVU5Hr1G085530.1	Barley	mitochondrion	93.9	89.8
GSMUA_Achr2P01800_001	Banana	cytosol	89.14	88.8
CDY71043	Canola	cytosol	52.95	88.25
VIT_18s0001g00480.t01	Wine grape	cytosol	88.57	87.9
Bra020134.1-P	Field mustard	cytosol	84.76	87.77
HORVU4Hr1G068820.1	Barley	cytosol	93.33	87.5
KRH25193	Soybean	nucleus	87.62	87.29
KRH30467	Soybean	nucleus	87.24	86.91
Solyc11g069000.1.1	Tomato	extracellular	87.05	86.88
Bra002337.1-P	Field mustard	cytosol	87.05	86.72
CDY16573	Canola	cytosol	87.05	86.72
CDX70950	Canola	cytosol	87.05	86.72
AT5G20890.1	Thale cress	cytosol	87.05	86.72
CDY09085	Canola	cytosol	86.86	86.53
CDX92428	Canola	cytosol	86.86	86.53
CDY72106	Canola	cytosol	34.29	84.91
CDY72126	Canola	cytosol	34.1	84.43
Zm00001d040688_P001	Maize	cytosol	43.81	81.85
GSMUA_Achr3P24440_001	Banana	peroxisome	84.76	80.91
Bra006584.1-P	Field mustard	cytosol	86.86	60.96
CDX88835	Canola	mitochondrion	86.86	60.0
PGSC0003DMT400019727	Potato	cytosol	15.43	58.27
Zm00001d052882_P001	Maize	plastid	40.57	42.01
Zm00001d018349_P001	Maize	cytosol	36.0	34.68
Zm00001d052056_P005	Maize	plasma membrane	35.81	34.5
Zm00001d053857_P002	Maize	cytosol	36.76	34.46
Zm00001d007960_P001	Maize	cytosol	34.67	33.21
Zm00001d018694_P002	Maize	cytosol	34.29	32.85
Zm00001d051742_P001	Maize	plastid	32.95	32.34
Zm00001d027371_P001	Maize	plasma membrane	32.19	31.59
Zm00001d007192_P001	Maize	cytosol	30.1	29.31
Zm00001d028183_P002	Maize	cytosol	28.95	27.24
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	27.24	26.09
Zm00001d007508_P005	Maize	cytosol	27.24	24.96
Zm00001d053553_P002	Maize	cytosol	28.76	23.16

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.2	Gene3D:3.30.260.10	Gene3D:3.50.7.10	ProteinID:AEN14333.1	InterPro:Chap_CCT_beta
InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	UniProt:G2XK63	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	ProteinID:ONM30939.1	ProteinID:ONM30943.1
ProteinID:ONM30946.1	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF23	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02341	UniParc:UPI000228F066	EnsemblPlantsGene:Zm00001d040257	EnsemblPlants:Zm00001d040257_P001	EnsemblPlants:Zm00001d040257_T001	SEG:seg

Description

T-complex protein 1 subunit beta

Coordinates

chr3:+:34256905..34263381

Molecular Weight (calculated)

57398.6 Da

IEP (calculated)

5.571

GRAVY (calculated)

-0.129

Length

525 amino acids

Sequence
(BLAST)

001: MERVLKDDAV EEKGERARMA SFVGAMAISD LVKTTLGPKG MDKILQSTGR GRNVTVTNDG ATILKSLHID NPAAKVLVDI SKVQDDEVGD GTTSVVVLAG
101: ELLKEAEKLI NMKIHPMTII AGYRMALECA RDSLLKKTMD NKENTDKFRS DLMNIAMTTL SSKILSQDKE YFAELAVDAV LRLKGSTNLE SIQILKKPGG
201: SLKDSFLDEG FILDKKIGIG QPKRIENAKI LVANTAMDTD KVKIYGARVR VDSMSKVADI EAAEKQKMRE KVQKIIAHGI NCFVNRQLIY NFPEELFADA
301: GILAIEHADF EGIERLALVT GGEIASTFDN PESVKLGQCK VIEEIMIGED RLIHFSGVAM GQACTIVLRG ASEHVLDEAE RSLHDALCVL SQTVNDTRVL
401: FGGGWPEMVM AKEVDELARK TPGKKSHAID AFSHALQAIP TIIADNAGLD SADLISQLRA EHHKENSTAG IDVITGTVGD MQKLGIQESF KVKQAILLSA
501: TEAAEMILRV DEIITCAPRR REDRM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.