Factsheet for Solyc11g069000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 22364583
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050534	Potato	cytosol	59.13	98.42
PGSC0003DMT400033155	Potato	cytosol	65.59	97.73
VIT_18s0001g00480.t01	Wine grape	cytosol	92.21	91.68
KRH30467	Soybean	nucleus	90.68	90.51
KRH25193	Soybean	nucleus	90.68	90.51
GSMUA_Achr2P01800_001	Banana	cytosol	89.92	89.75
CDY71043	Canola	cytosol	53.61	89.52
Bra002337.1-P	Field mustard	cytosol	89.16	88.99
CDY16573	Canola	cytosol	89.16	88.99
Bra020134.1-P	Field mustard	cytosol	85.55	88.76
Os05t0556700-01	Rice	cytosol, plasma membrane	55.32	88.72
CDX70950	Canola	cytosol	88.78	88.61
CDX92428	Canola	cytosol	88.78	88.61
CDY09085	Canola	cytosol	88.4	88.24
AT5G20890.1	Thale cress	cytosol	88.21	88.05
Os03t0619400-01	Rice	plasma membrane	87.83	88.0
EES00491	Sorghum	cytosol	87.64	87.81
TraesCS4D01G250100.1	Wheat	cytosol	83.46	87.8
EES00273	Sorghum	cytosol	84.98	87.65
TraesCS4B01G250200.1	Wheat	cytosol	83.27	87.6
CDY72106	Canola	cytosol	35.17	87.26
Zm00001d040257_P001	Maize	cytosol	86.88	87.05
CDY72126	Canola	cytosol	34.98	86.79
TraesCS4A01G054800.1	Wheat	cytosol, unclear	86.5	86.67
TraesCS5A01G342600.1	Wheat	cytosol	86.5	86.17
TraesCS5D01G347400.1	Wheat	cytosol	86.5	86.17
Zm00001d008369_P001	Maize	cytosol, nucleus	85.93	86.1
TraesCS5B01G341900.1	Wheat	cytosol	86.69	85.88
HORVU5Hr1G085530.1	Barley	mitochondrion	86.5	82.88
HORVU4Hr1G068820.1	Barley	cytosol	86.5	81.25
GSMUA_Achr3P24440_001	Banana	peroxisome	84.41	80.73
TraesCS3B01G595300.1	Wheat	cytosol	19.2	74.81
Zm00001d040688_P001	Maize	cytosol	39.35	73.67
Bra006584.1-P	Field mustard	cytosol	88.4	62.17
CDX88835	Canola	mitochondrion	88.59	61.32
Zm00001d052882_P001	Maize	plastid	40.11	41.62
Solyc01g090750.2.1	Tomato	nucleus	35.17	33.95
Solyc05g013990.2.1	Tomato	nucleus	34.41	33.83
Solyc06g065520.2.1	Tomato	nucleus, plastid	35.74	33.69
Solyc03g118910.1.1	Tomato	plastid	34.03	33.21
Solyc02g063090.2.1	Tomato	nucleus, unclear	29.85	29.35
Solyc02g085790.2.1	Tomato	extracellular	29.28	28.79
Solyc05g056310.2.1	Tomato	extracellular, plastid	29.66	28.01
Solyc01g088080.2.1	Tomato	nucleus	26.05	25.32

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.2	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_beta	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005832	GO:GO:0005886	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0030312	GO:GO:0044183	GO:GO:0046658	GO:GO:0051082
GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
UniProt:K4DA57	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF23	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	EnsemblPlantsGene:Solyc11g069000.1
EnsemblPlants:Solyc11g069000.1.1	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02341	UniParc:UPI000276A7A1	:	:

Description

T-complex protein 1 subunit beta [Source:Projected from Arabidopsis thaliana (AT5G20890) UniProtKB/Swiss-Prot;Acc:Q940P8]

Coordinates

chr11:-:53568625..53573952

Molecular Weight (calculated)

56970.1 Da

IEP (calculated)

5.817

GRAVY (calculated)

-0.080

Length

526 amino acids

Sequence
(BLAST)

001: MAIDKLFKDE ATEEKGERAR MASFIGAMAI ADLVKTTLGP KGMDKILQST GRGHSVTVTN DGATILKSLH IDNPAAKVLV DISKVQDEEV GDGTTSVVVL
101: AGELLREAEK LVNAKIHPMT IIAGFRMASE CARNVLEQKV VDNKQDAEKF RSDLMNIART TLSSKILSQD KEHFAKLAVD AVMRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG VGQPKRIENA KILVANTAMD TDKVKIYGAR VRVDSMAKVA DLEAAEKEKM REKVQKIISH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFDGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGV AMGQACTIVL RGASPHVLDE AERSLHDALC VLSQTVNDSR
401: VLLGGGWPEM VMAKAVDELA KKTPGKRSHA IEAFTRALLA IPTTIADNAG LDSAELIAQL RAEHHKDESN AGIDVISGSV GDMSELGISE SFKVKQAVLL
501: SATEAAEMIL RVDEIITCAP RRREGM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.