Factsheet for Solyc01g090750.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 25464976
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066954	Potato	cytosol	99.45	99.45
VIT_15s0021g02230.t01	Wine grape	cytosol	89.17	89.01
KRH59103	Soybean	nucleus	88.62	88.62
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	88.44	88.44
GSMUA_Achr11P...	Banana	cytosol	88.81	87.68
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	87.34	87.34
AT3G20050.1	Thale cress	cytosol	86.61	86.61
TraesCS7B01G124100.1	Wheat	cytosol, golgi, unclear	86.42	86.42
EES05938	Sorghum	cytosol	85.87	85.87
TraesCS7A01G062100.1	Wheat	cytosol	85.87	85.87
TraesCS7A01G217200.1	Wheat	cytosol	85.87	85.87
TraesCS7D01G056800.1	Wheat	cytosol	85.87	85.87
CDY25374	Canola	cytosol	85.87	85.87
CDY42227	Canola	cytosol	85.69	85.69
Zm00001d018349_P001	Maize	cytosol	85.69	85.69
Zm00001d052056_P005	Maize	plasma membrane	85.69	85.69
CDY36063	Canola	cytosol	85.5	85.5
CDY24564	Canola	cytosol	85.5	85.5
CDX82264	Canola	cytosol	85.5	85.5
TraesCS4A01G427500.1	Wheat	cytosol, unclear	85.5	85.5
Bra001773.1-P	Field mustard	cytosol	85.5	85.35
TraesCS1D01G208500.1	Wheat	cytosol	77.8	85.14
TraesCS1B01G218800.1	Wheat	cytosol	73.03	84.32
TraesCS1A01G205200.1	Wheat	cytosol	84.04	84.04
Bra035820.1-P	Field mustard	cytosol	85.69	83.99
CDY33444	Canola	cytosol	85.5	82.77
HORVU1Hr1G052730.26	Barley	cytosol	58.9	82.73
TraesCS7D01G218500.2	Wheat	cytosol	86.42	82.49
GSMUA_Achr2P01090_001	Banana	cytosol	52.11	78.67
HORVU7Hr1G044070.2	Barley	cytosol	80.18	76.53
Bra038252.1-P	Field mustard	cytosol	85.69	61.37
Solyc11g069000.1.1	Tomato	extracellular	33.95	35.17
Solyc06g065520.2.1	Tomato	nucleus, plastid	34.68	33.87
Solyc03g118910.1.1	Tomato	plastid	32.29	32.65
Solyc05g013990.2.1	Tomato	nucleus	31.01	31.59
Solyc01g088080.2.1	Tomato	nucleus	27.89	28.1
Solyc05g056310.2.1	Tomato	extracellular, plastid	28.44	27.83
Solyc02g063090.2.1	Tomato	nucleus, unclear	26.24	26.73
Solyc02g085790.2.1	Tomato	extracellular	26.05	26.54

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_alpha	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	UniProt:K4AZ16	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751
ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF177	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
EnsemblPlantsGene:Solyc01g090750.2	EnsemblPlants:Solyc01g090750.2.1	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02340	UniParc:UPI0002767E16	SEG:seg

Description

T-complex protein 1 subunit alpha [Source:Projected from Arabidopsis thaliana (AT3G20050) UniProtKB/Swiss-Prot;Acc:P28769]

Coordinates

chr1:+:84402103..84411651

Molecular Weight (calculated)

59196.8 Da

IEP (calculated)

6.275

GRAVY (calculated)

-0.043

Length

545 amino acids

Sequence
(BLAST)

001: MAYSAQTLDI SGDRQSGQDV RTQNVTACQA VANIVKSSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIIA
101: AELLKGANEL VRHKIHPTSI ISGYRLAMRE ACKYVEEKLA VKVDKLGKDS LINCAKTSMS SKLIADDSDF FANMVVEAVQ AVKMTNVRGE IKYPIKGINL
201: LKAHGKSAKD SYLLKGYALN TGRAAQGMPL RVAPARIACL DFNLQKTKMQ MGVQVLVTDP RELERIRQRE ADMTKERIQK LLSAGANVVL TSKGIDDMAL
301: KYFVEAGAIA VRRVRKEDLR HVAKATGATV VSTFADMEGE ETFEPSFLGH ADEVVEERIA DDDVIMVKGT KTSSSVSLIL RGANDFMLDE MERALHDALC
401: IVKRTLESTT VVAGGGAVEA ALCVYLEYLA TTLGSREQLA IAQFAESLLV IPKVLANNAA KDSSDLVSKL RSCHYLAQTK ADKKHLSSMG LDLSKGTVRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIRLVKDE SQNDE

Best Arabidopsis Sequence Match ( AT3G20050.1 )
(BLAST)

001: MSISAQNPDI SGDRQSGQDV RTQNVMACQA VSNIVKTSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE SCKYIEEKLV TKVEKLGKVP LINCAKTSMS SKLISGDSDF FANLVVEAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLNGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKEDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA DDDVILIKGT KTSSAVSLIL RGANDYMLDE MERALHDALC
401: IVKRTLESNT VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFADALLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHYSSMG LDLVNGTIRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKDE SQGEE

Arabidopsis Description

CCT1T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P28769]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.