Factsheet for PGSC0003DMT400066954

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g090750.2.1	Tomato	nucleus	99.45	99.45
VIT_15s0021g02230.t01	Wine grape	cytosol	88.81	88.64
KRH59103	Soybean	nucleus	88.26	88.26
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	88.07	88.07
GSMUA_Achr11P...	Banana	cytosol	88.44	87.32
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	86.97	86.97
AT3G20050.1	Thale cress	cytosol	86.61	86.61
TraesCS7B01G124100.1	Wheat	cytosol, golgi, unclear	86.24	86.24
CDY25374	Canola	cytosol	85.87	85.87
TraesCS7A01G062100.1	Wheat	cytosol	85.69	85.69
CDY42227	Canola	cytosol	85.69	85.69
TraesCS7A01G217200.1	Wheat	cytosol	85.69	85.69
TraesCS7D01G056800.1	Wheat	cytosol	85.69	85.69
EES05938	Sorghum	cytosol	85.5	85.5
CDY36063	Canola	cytosol	85.5	85.5
CDY24564	Canola	cytosol	85.5	85.5
CDX82264	Canola	cytosol	85.5	85.5
Bra001773.1-P	Field mustard	cytosol	85.5	85.35
Zm00001d052056_P005	Maize	plasma membrane	85.32	85.32
Zm00001d018349_P001	Maize	cytosol	85.32	85.32
TraesCS4A01G427500.1	Wheat	cytosol, unclear	85.32	85.32
TraesCS1D01G208500.1	Wheat	cytosol	77.61	84.94
TraesCS1B01G218800.1	Wheat	cytosol	72.84	84.11
Bra035820.1-P	Field mustard	cytosol	85.69	83.99
TraesCS1A01G205200.1	Wheat	cytosol	83.85	83.85
CDY33444	Canola	cytosol	85.5	82.77
HORVU1Hr1G052730.26	Barley	cytosol	58.72	82.47
TraesCS7D01G218500.2	Wheat	cytosol	86.24	82.31
GSMUA_Achr2P01090_001	Banana	cytosol	51.74	78.12
HORVU7Hr1G044070.2	Barley	cytosol	80.0	76.36
Bra038252.1-P	Field mustard	cytosol	85.69	61.37
PGSC0003DMT400067201	Potato	cytosol	34.86	34.05
PGSC0003DMT400014441	Potato	plastid	32.48	32.84
PGSC0003DMT400019727	Potato	cytosol	8.26	32.37
PGSC0003DMT400033155	Potato	cytosol	20.37	31.44
PGSC0003DMT400050534	Potato	cytosol	17.61	30.38
PGSC0003DMT400017609	Potato	cytosol	28.07	28.28
PGSC0003DMT400060294	Potato	cytosol	28.62	28.11
PGSC0003DMT400027968	Potato	cytosol	11.19	27.85
PGSC0003DMT400073555	Potato	cytosol	12.84	26.82
PGSC0003DMT400033011	Potato	cytosol	26.24	26.73
PGSC0003DMT400062134	Potato	cytosol	26.05	26.54

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:102584935	MapMan:20.3.1.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_alpha
InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M1CGF6	PFAM:PF00118
EnsemblPlantsGene:PGSC0003DMG400026026	PGSC:PGSC0003DMG400026026	EnsemblPlants:PGSC0003DMT400066954	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751
ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF177	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02340	UniParc:UPI000295B52A	RefSeq:XP_006347917.1	SEG:seg	:

Description

T-complex protein 1 subunit alpha [Source:PGSC_GENE;Acc:PGSC0003DMG400026026]

Coordinates

chr1:+:69998302..70008263

Molecular Weight (calculated)

59223.8 Da

IEP (calculated)

6.275

GRAVY (calculated)

-0.050

Length

545 amino acids

Sequence
(BLAST)

001: MAYSAQTLDI SGDRQSGQDV RTQNVTACQA VANIVKSSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIIA
101: AELLKGANEL VRHKIHPTSI ISGYRLAMRE ACKYVEEKLA VKVDKLGKDS LINCAKTSMS SKLIADDSDF FANMVVEAVQ AVKMTNVRGE IRYPIKGINL
201: LKAHGKSAKD SYLLKGYALN TGRAAQGMPL RVAPARIACL DFNLQKTKMQ MGVQVLVNDP RELERIRQRE ADMTKERIQK LLSAGANVVL TSKGIDDMAL
301: KYFVEAGAIA VRRVRKEDLR HVAKATGATV VSTFADMEGE ETFEPSFLGH ADEVVEERIA DDDVIMVKGT KTSSSVSLIL RGANDFMLDE MERALHDALC
401: IVKRTLESST VVAGGGAVEA ALCVYLEYLA TTLGSREQLA IAQFAESLLV IPKVLANNAA KDSSDLVSKL RSCHYLAQTK ADKKHLSSMG LDLSKGTVRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIRLVKDE SQNDE

Best Arabidopsis Sequence Match ( AT3G20050.1 )
(BLAST)

001: MSISAQNPDI SGDRQSGQDV RTQNVMACQA VSNIVKTSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE SCKYIEEKLV TKVEKLGKVP LINCAKTSMS SKLISGDSDF FANLVVEAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLNGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKEDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA DDDVILIKGT KTSSAVSLIL RGANDYMLDE MERALHDALC
401: IVKRTLESNT VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFADALLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHYSSMG LDLVNGTIRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKDE SQGEE

Arabidopsis Description

CCT1T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P28769]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.