Factsheet for PGSC0003DMT400060294

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g056310.2.1	Tomato	extracellular, plastid	99.28	98.92
VIT_07s0130g00410.t01	Wine grape	cytosol	90.63	90.31
Bra001174.1-P	Field mustard	cytosol	89.01	89.01
CDX74120	Canola	cytosol	89.01	89.01
VIT_17s0000g08170.t01	Wine grape	cytosol	88.83	88.51
CDY18835	Canola	cytosol	88.47	88.47
Bra040242.1-P	Field mustard	cytosol	88.47	88.47
GSMUA_Achr6P23290_001	Banana	cytosol	88.65	88.33
AT5G26360.1	Thale cress	cytosol	88.11	88.11
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	87.93	88.09
KRH38791	Soybean	cytosol	87.57	87.73
CDY49990	Canola	cytosol	88.83	87.1
EER92655	Sorghum	cytosol	87.39	86.92
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	87.39	86.92
Zm00001d028183_P002	Maize	cytosol	87.21	86.74
Os02t0247200-01	Rice	cytosol	87.03	86.4
KRG92501	Soybean	cytosol	86.67	86.36
GSMUA_Achr5P09040_001	Banana	cytosol	86.67	86.36
TraesCS7A01G346200.1	Wheat	cytosol	85.23	84.77
HORVU7Hr1G080310.1	Barley	cytosol	84.86	84.41
TraesCS7B01G237000.1	Wheat	cytosol	85.05	83.54
TraesCS7D01G332900.1	Wheat	cytosol	84.86	83.36
Zm00001d053553_P002	Maize	cytosol	87.03	74.08
PGSC0003DMT400027968	Potato	cytosol	12.07	30.59
PGSC0003DMT400067201	Potato	cytosol	30.45	30.29
PGSC0003DMT400073555	Potato	cytosol	14.23	30.27
PGSC0003DMT400014441	Potato	plastid	29.01	29.87
PGSC0003DMT400019727	Potato	cytosol	7.39	29.5
PGSC0003DMT400066954	Potato	cytosol	28.11	28.62
PGSC0003DMT400033155	Potato	cytosol	17.3	27.2
PGSC0003DMT400017609	Potato	cytosol	25.95	26.62
PGSC0003DMT400033011	Potato	cytosol	25.59	26.54
PGSC0003DMT400062134	Potato	cytosol	25.41	26.36
PGSC0003DMT400050534	Potato	cytosol	13.51	23.73

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:102578754	MapMan:20.3.1.3	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_gamma
InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M1C5J7	PFAM:PF00118	EnsemblPlantsGene:PGSC0003DMG400023453
PGSC:PGSC0003DMG400023453	EnsemblPlants:PGSC0003DMT400060294	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF24	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02344	UniParc:UPI0002968418	RefSeq:XP_006345774.1	:	:	:

Description

Chaperonin containing t-complex protein 1, gamma subunit, tcpg [Source:PGSC_GENE;Acc:PGSC0003DMG400023453]

Coordinates

chr5:+:51779078..51787386

Molecular Weight (calculated)

60470.7 Da

IEP (calculated)

5.664

GRAVY (calculated)

-0.117

Length

555 amino acids

Sequence
(BLAST)

001: MHAPVLVMQD SMKREQGGKV QRANIQAAKA VADIIRTTLG PRSMLKMLLD AAGGIVVTND GNAILRELDL AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF IDKKYHPTVI CRAYAKALED AVAVLDKIAM TVDVEDRETM LGLVKSCIGT KFTSQFGDLI ADLAIDATRM VGVELGQGLR EVDIKKYIKV
201: EKVPGGQLED SVVLKGVMMN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAEILR EEDWTVLLKM EEEYIENICA QILKFKPDVV ITEKGLSDLA
301: CHYLCKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDVGTGAGLF EVKKIGDEFF TFIVDCKDPK ACTILLRGAS KDLLNEVERN LQDAMSVARN
401: IIKCPKLVPG GGATELTVSA MLKQKSSSVE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWIGI DGNTGEITDM KERKIWDSYA
501: VKAQAFKTAI EAACLLLRID DIVSGIKKKQ APGAGPSKPK IDEEGDADND QLIPE

Best Arabidopsis Sequence Match ( AT5G26360.1 )
(BLAST)

001: MHAPVLVLSD SLKRESGSKV HHGNIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNAILRELDV AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF LEKNYHPTVI CRAYIKALED SIAVLDKIAM SIDINDRSQV LGLVKSCIGT KFTSQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQFED SEVLKGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILKFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDIGTGAGLF EVKKIGDDFF SFIVDCKEPK ACTVLLRGPS KDFINEVERN LQDAMSVARN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKIWDSYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGSGPSKPT IETEGDADNE QILPD

Arabidopsis Description

CCT3T-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A178UHF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.