Factsheet for VIT_07s0130g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001174.1-P	Field mustard	cytosol	93.54	93.87
CDX74120	Canola	cytosol	93.54	93.87
VIT_17s0000g08170.t01	Wine grape	cytosol	93.18	93.18
GSMUA_Achr6P23290_001	Banana	cytosol	93.0	93.0
CDY18835	Canola	cytosol	92.64	92.97
Bra040242.1-P	Field mustard	cytosol	92.46	92.79
AT5G26360.1	Thale cress	cytosol	91.56	91.89
CDY49990	Canola	cytosol	93.36	91.87
GSMUA_Achr5P09040_001	Banana	cytosol	91.02	91.02
PGSC0003DMT400060294	Potato	cytosol	90.31	90.63
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	89.95	90.43
KRH38791	Soybean	cytosol	89.95	90.43
Solyc05g056310.2.1	Tomato	extracellular, plastid	89.95	89.95
KRG92501	Soybean	cytosol	89.95	89.95
EER92655	Sorghum	cytosol	88.69	88.53
Zm00001d028183_P002	Maize	cytosol	88.33	88.17
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	87.97	87.81
Os02t0247200-01	Rice	cytosol	87.97	87.66
HORVU7Hr1G080310.1	Barley	cytosol	85.82	85.66
TraesCS7A01G346200.1	Wheat	cytosol	85.82	85.66
TraesCS7B01G237000.1	Wheat	cytosol	86.0	84.78
TraesCS7D01G332900.1	Wheat	cytosol	85.64	84.42
VIT_05s0094g00640.t01	Wine grape	cytosol	22.8	78.88
Zm00001d053553_P002	Maize	cytosol	87.97	75.15
VIT_12s0028g00350.t01	Wine grape	cytosol	30.34	31.59
VIT_00s0670g00010.t01	Wine grape	cytosol	30.7	30.43
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	28.73	30.02
VIT_15s0021g02230.t01	Wine grape	cytosol	28.55	29.12
VIT_18s0001g00480.t01	Wine grape	cytosol	27.65	29.11
VIT_08s0007g07460.t01	Wine grape	cytosol	26.93	27.52
VIT_01s0137g00250.t01	Wine grape	cytosol	30.88	25.98
VIT_14s0006g03200.t01	Wine grape	cytosol	24.42	25.42

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100264926	wikigene:100264926	MapMan:20.3.1.3	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EMBL:AM465950	ProteinID:CAN74796	ProteinID:CAN74796.1	ProteinID:CBI27721	ProteinID:CBI27721.3	InterPro:Chap_CCT_gamma
InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	ncoils:Coil	InterPro:Cpn60/TCP-1	UniProt:D7TB48	EMBL:FN595755
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832	GO:GO:0006457
GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EntrezGene:LOC100264926
wikigene:LOC100264926	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF24	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02344	UniParc:UPI00019859ED	ArrayExpress:VIT_07s0130g00410	EnsemblPlantsGene:VIT_07s0130g00410	EnsemblPlants:VIT_07s0130g00410.t01	unigene:Vvi.21322
RefSeq:XP_002268799	RefSeq:XP_002268799.1	:	:	:	:

Description

T-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:D7TB48]

Coordinates

chr7:-:20722110..20732648

Molecular Weight (calculated)

60508.6 Da

IEP (calculated)

6.301

GRAVY (calculated)

-0.135

Length

557 amino acids

Sequence
(BLAST)

001: MQAPVLVLKD SLKRESGSKV QHANIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNAILRELDL AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF IDKSYHPTVI CRAYNKALED AIAVLDKIAM SIDVKDRSTV LGLVKSCIGT KFTSQFGDLI ADLAIDATMT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQLED SKVLKGVMIN KDVIAPGKMR RKIVNPRIIL LDCPLEYKKG ENQTNAELVK EEDWGVLLKM EEEYIESICM QILKFKPDLV ITEKGLSDLA
301: CHYLSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDVGTGAGLF EVKKIGDEFF AFIVDCKDPK ACTVLLRGPS KDLLNEVERN LQDAMCVARN
401: IIKNPKLVPG GGATELTVSA TLKQKSSSIE GIEKWPYEAA AVAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWMGI DGNTGAITDM KERKIWDAYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGAGQAPSK PKIEEEGDAD NEQILPE

Best Arabidopsis Sequence Match ( AT5G26360.1 )
(BLAST)

001: MHAPVLVLSD SLKRESGSKV HHGNIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNAILRELDV AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF LEKNYHPTVI CRAYIKALED SIAVLDKIAM SIDINDRSQV LGLVKSCIGT KFTSQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQFED SEVLKGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILKFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDIGTGAGLF EVKKIGDDFF SFIVDCKEPK ACTVLLRGPS KDFINEVERN LQDAMSVARN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKIWDSYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGSGPSKPT IETEGDADNE QILPD

Arabidopsis Description

CCT3T-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A178UHF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.