Factsheet for VIT_05s0094g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g08170.t01	Wine grape	cytosol	84.47	24.42
VIT_07s0130g00410.t01	Wine grape	cytosol	78.88	22.8
VIT_15s0021g02230.t01	Wine grape	cytosol	27.33	8.06
VIT_14s0006g03200.t01	Wine grape	cytosol	24.84	7.48
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	23.6	7.13
VIT_00s0670g00010.t01	Wine grape	cytosol	24.84	7.12
VIT_12s0028g00350.t01	Wine grape	cytosol	22.98	6.92
VIT_01s0137g00250.t01	Wine grape	cytosol	24.84	6.04
VIT_18s0001g00480.t01	Wine grape	cytosol	18.63	5.67
VIT_08s0007g07460.t01	Wine grape	cytosol	18.63	5.5

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:104879505	Gene3D:3.30.260.10	Gene3D:3.50.7.10	MapMan:35.1	ProteinID:CCB49388
ProteinID:CCB49388.1	InterPro:Chaperone_TCP-1	InterPro:Cpn60/TCP-1	UniProt:F6HB19	EMBL:FN595507	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832	GO:GO:0006458	GO:GO:0008150
GO:GO:0009987	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304	PANTHER:PTHR11353
PANTHER:PTHR11353:SF24	SUPFAM:SSF48592	SUPFAM:SSF52029	InterPro:TCP-1-like_intermed_sf	UniParc:UPI00021095B8	ArrayExpress:VIT_05s0094g00640
EnsemblPlantsGene:VIT_05s0094g00640	EnsemblPlants:VIT_05s0094g00640.t01	RefSeq:XP_019075440.1	:	:	:

Description

No Description!

Coordinates

chr5:-:23991619..23998393

Molecular Weight (calculated)

17836.7 Da

IEP (calculated)

10.289

GRAVY (calculated)

-0.304

Length

161 amino acids

Sequence
(BLAST)

001: MQIQKFKPDL VITEKGLSDL AGHYLSKAGV NAIRRLRKAD NNRIVKACRA VVVNRPDELQ ESDVGTRARI FEVQKIRDEF FAFKSECTDP KAYTILLKGA
101: SKVHLNGVER NLQDAMSVAR NMIKIPKLVP GGGATELTIS ATLKQKSSSV EWIELNADGK V

Best Arabidopsis Sequence Match ( AT5G26360.1 )
(BLAST)

001: MHAPVLVLSD SLKRESGSKV HHGNIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNAILRELDV AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF LEKNYHPTVI CRAYIKALED SIAVLDKIAM SIDINDRSQV LGLVKSCIGT KFTSQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQFED SEVLKGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILKFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDIGTGAGLF EVKKIGDDFF SFIVDCKEPK ACTVLLRGPS KDFINEVERN LQDAMSVARN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKIWDSYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGSGPSKPT IETEGDADNE QILPD

Arabidopsis Description

CCT3T-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A178UHF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.