Factsheet for VIT_17s0000g08170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0130g00410.t01	Wine grape	cytosol	93.18	93.18
GSMUA_Achr6P23290_001	Banana	cytosol	90.84	90.84
Bra001174.1-P	Field mustard	cytosol	90.13	90.45
CDX74120	Canola	cytosol	90.13	90.45
CDY18835	Canola	cytosol	89.23	89.55
Bra040242.1-P	Field mustard	cytosol	89.05	89.37
GSMUA_Achr5P09040_001	Banana	cytosol	89.05	89.05
PGSC0003DMT400060294	Potato	cytosol	88.51	88.83
AT5G26360.1	Thale cress	cytosol	88.51	88.83
KRG92501	Soybean	cytosol	88.69	88.69
EER92655	Sorghum	cytosol	88.69	88.53
CDY49990	Canola	cytosol	89.95	88.52
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	87.97	88.45
KRH38791	Soybean	cytosol	87.97	88.45
Os02t0247200-01	Rice	cytosol	88.69	88.37
Zm00001d028183_P002	Maize	cytosol	88.51	88.35
Solyc05g056310.2.1	Tomato	extracellular, plastid	88.33	88.33
Os06t0538000-01	Rice	cytosol, plasma membrane, plastid	88.15	87.99
TraesCS7A01G346200.1	Wheat	cytosol	86.89	86.74
HORVU7Hr1G080310.1	Barley	cytosol	86.89	86.74
TraesCS7B01G237000.1	Wheat	cytosol	87.07	85.84
TraesCS7D01G332900.1	Wheat	cytosol	86.71	85.49
VIT_05s0094g00640.t01	Wine grape	cytosol	24.42	84.47
Zm00001d053553_P002	Maize	cytosol	88.33	75.46
VIT_12s0028g00350.t01	Wine grape	cytosol	29.44	30.65
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	28.55	29.83
VIT_00s0670g00010.t01	Wine grape	cytosol	29.8	29.54
VIT_15s0021g02230.t01	Wine grape	cytosol	28.73	29.3
VIT_18s0001g00480.t01	Wine grape	cytosol	27.11	28.54
VIT_08s0007g07460.t01	Wine grape	cytosol	27.29	27.89
VIT_01s0137g00250.t01	Wine grape	cytosol	29.98	25.23
VIT_14s0006g03200.t01	Wine grape	cytosol	24.06	25.05

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100255417	wikigene:100255417	MapMan:20.3.1.3	Gene3D:3.30.260.10	Gene3D:3.50.7.10
ProteinID:CBI15045	ProteinID:CBI15045.3	InterPro:Chap_CCT_gamma	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	ncoils:Coil
InterPro:Cpn60/TCP-1	UniProt:D7SHT5	EMBL:FN594950	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005832	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987
GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	EntrezGene:LOC100255417	wikigene:LOC100255417	PFAM:PF00118	PRINTS:PR00304
ScanProsite:PS00750	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF24	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	TIGR:TC54789	TIGR:TC59239	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02344	UniParc:UPI00019852C3
ArrayExpress:VIT_17s0000g08170	EnsemblPlantsGene:VIT_17s0000g08170	EnsemblPlants:VIT_17s0000g08170.t01	unigene:Vvi.4455	RefSeq:XP_002282991	RefSeq:XP_002282991.1

Description

T-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:D7SHT5]

Coordinates

chr17:-:9224833..9239785

Molecular Weight (calculated)

60480.4 Da

IEP (calculated)

5.652

GRAVY (calculated)

-0.146

Length

557 amino acids

Sequence
(BLAST)

001: MQAPVLVLKD SLTRESGSKV QHANIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNSILRELDL AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF IDKNFHPTVI CRAYNKALED AIAVLDKIAA PVDVNDRVAM LGMVKSCIGT KFTGQFGDLI ADLALDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQLED SKVLKGVMIN KDVVAPGKMR RKIINPRIIL LDCPLEYKKG ENQTNAELVR EEDWGILLKM EEEYIENLCM QILKFKPDLV ITEKGLSDLA
301: CHYLSKAGVS AIRRLRKTDN NRIAKACGAV VVNRPDELQE SDVGTRAGIF EVKKIGDEFF AFIDECTDPK ACTVLLRGAS KDLLNEVERN LQDAMSVARN
401: MIKNPKLVPG GGATELTVSA TLKQKSSSVE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWIGI DGSTGAITDM KERKIWDAYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGAGQAPSK PTIEQEGDAD NEQMIPE

Best Arabidopsis Sequence Match ( AT5G26360.1 )
(BLAST)

001: MHAPVLVLSD SLKRESGSKV HHGNIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNAILRELDV AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF LEKNYHPTVI CRAYIKALED SIAVLDKIAM SIDINDRSQV LGLVKSCIGT KFTSQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQFED SEVLKGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILKFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDIGTGAGLF EVKKIGDDFF SFIVDCKEPK ACTVLLRGPS KDFINEVERN LQDAMSVARN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKIWDSYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGSGPSKPT IETEGDADNE QILPD

Arabidopsis Description

CCT3T-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A178UHF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.