Factsheet for VIT_15s0021g02230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59103	Soybean	nucleus	93.96	94.13
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	93.77	93.94
GSMUA_Achr11P...	Banana	cytosol	93.04	92.03
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	91.03	91.19
Zm00001d052056_P005	Maize	plasma membrane	89.56	89.72
EES05938	Sorghum	cytosol	89.56	89.72
AT3G20050.1	Thale cress	cytosol	89.38	89.54
Zm00001d018349_P001	Maize	cytosol	89.19	89.36
CDY25374	Canola	cytosol	89.19	89.36
Solyc01g090750.2.1	Tomato	nucleus	89.01	89.17
CDY42227	Canola	cytosol	89.01	89.17
CDY24564	Canola	cytosol	88.83	88.99
CDX82264	Canola	cytosol	88.64	88.81
CDY36063	Canola	cytosol	88.64	88.81
PGSC0003DMT400066954	Potato	cytosol	88.64	88.81
Bra001773.1-P	Field mustard	cytosol	88.64	88.64
TraesCS7B01G124100.1	Wheat	cytosol, golgi, unclear	87.36	87.52
Bra035820.1-P	Field mustard	cytosol	89.01	87.41
TraesCS7A01G217200.1	Wheat	cytosol	86.81	86.97
TraesCS1D01G208500.1	Wheat	cytosol	79.3	86.95
TraesCS7D01G056800.1	Wheat	cytosol	86.63	86.79
TraesCS1A01G205200.1	Wheat	cytosol	86.63	86.79
TraesCS7A01G062100.1	Wheat	cytosol	86.63	86.79
HORVU1Hr1G052730.26	Barley	cytosol	61.54	86.6
TraesCS4A01G427500.1	Wheat	cytosol, unclear	86.26	86.42
TraesCS1B01G218800.1	Wheat	cytosol	74.54	86.23
CDY33444	Canola	cytosol	88.83	86.15
TraesCS7D01G218500.2	Wheat	cytosol	87.0	83.19
GSMUA_Achr2P01090_001	Banana	cytosol	53.85	81.44
HORVU7Hr1G044070.2	Barley	cytosol	82.23	78.63
Bra038252.1-P	Field mustard	cytosol	89.01	63.86
VIT_18s0001g00480.t01	Wine grape	cytosol	34.8	35.92
VIT_00s0670g00010.t01	Wine grape	cytosol	34.62	33.63
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	32.78	33.58
VIT_12s0028g00350.t01	Wine grape	cytosol	29.67	30.28
VIT_08s0007g07460.t01	Wine grape	cytosol	29.49	29.54
VIT_17s0000g08170.t01	Wine grape	cytosol	29.3	28.73
VIT_07s0130g00410.t01	Wine grape	cytosol	29.12	28.55
VIT_05s0094g00640.t01	Wine grape	cytosol	8.06	27.33
VIT_14s0006g03200.t01	Wine grape	cytosol	25.64	26.17
VIT_01s0137g00250.t01	Wine grape	cytosol	30.95	25.53

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100249575	wikigene:100249575	MapMan:20.3.1.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EMBL:AM450455	ProteinID:CAN67647	ProteinID:CAN67647.1	ProteinID:CBI16621	ProteinID:CBI16621.3	InterPro:Chap_CCT_alpha
InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	UniProt:D7SLU3	EMBL:FN594952	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832	GO:GO:0006457	GO:GO:0006458
GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EntrezGene:LOC100249575	wikigene:LOC100249575
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353
PANTHER:PTHR11353:SF177	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	TIGR:TC53055	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02340	UniParc:UPI0001BE0EA8	ArrayExpress:VIT_15s0021g02230	EnsemblPlantsGene:VIT_15s0021g02230	EnsemblPlants:VIT_15s0021g02230.t01	unigene:Vvi.2766
RefSeq:XP_002276924	RefSeq:XP_002276924.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr15:-:13163529..13176175

Molecular Weight (calculated)

59175.8 Da

IEP (calculated)

5.968

GRAVY (calculated)

-0.047

Length

546 amino acids

Sequence
(BLAST)

001: MALSAQTPDI MGERQSGQDV RSQNVVACQA VANIVKSSLG PVGLDKMLVD DIGDVTITND GATILKMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE ACKYVDEKLA VKVEKLGKDS LINCAKTSMS SKLIAGDSDF FASLVVDAVQ AVKTTNARGE VKYPIKGINI
201: LKAHGKSAKD SYLLNGYALN TGRAAQGMPL RVAPARIACL DFNLQRTKMQ LGVQVLVTDP RELEKIRQRE ADMTKERIEK LLKAGANVVL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKDDMR HVAKATGATM VSTFADMEGD ETFDSSFLGY ADEVVEERIA DDDVIMIKGT KTTSGVSLIL RGANDYMLDE MDRALHDALS
401: IVKRTLESNT VVAGGGAVEA ALSVYLEYLA TTLGSREQLA IAEFAESLLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHLSSMG LDLLKGTVRN
501: NLEAGVIEPA MSKVKILQFA TEAAITILRI DDMIKLVKDE TQNEED

Best Arabidopsis Sequence Match ( AT3G20050.1 )
(BLAST)

001: MSISAQNPDI SGDRQSGQDV RTQNVMACQA VSNIVKTSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE SCKYIEEKLV TKVEKLGKVP LINCAKTSMS SKLISGDSDF FANLVVEAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLNGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKEDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA DDDVILIKGT KTSSAVSLIL RGANDYMLDE MERALHDALC
401: IVKRTLESNT VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFADALLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHYSSMG LDLVNGTIRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKDE SQGEE

Arabidopsis Description

CCT1T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P28769]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.