CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plasma membrane
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25374	Canola	cytosol	99.08	99.08
CDY24564	Canola	cytosol	98.72	98.72
AT3G20050.1	Thale cress	cytosol	98.17	98.17
CDX82264	Canola	cytosol	97.25	97.25
CDY36063	Canola	cytosol	97.06	97.06
CDY33444	Canola	cytosol	99.63	96.45
KRH59103	Soybean	nucleus	89.54	89.54
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	89.36	89.36
VIT_15s0021g02230.t01	Wine grape	cytosol	89.17	89.01
Os04t0551800-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	86.97	86.97
GSMUA_Achr11P...	Banana	cytosol	87.52	86.41
Zm00001d052056_P005	Maize	plasma membrane	86.06	86.06
PGSC0003DMT400066954	Potato	cytosol	85.69	85.69
Solyc01g090750.2.1	Tomato	nucleus	85.69	85.69
Zm00001d018349_P001	Maize	cytosol	85.5	85.5
EES05938	Sorghum	cytosol	85.5	85.5
TraesCS7B01G124100.1	Wheat	cytosol, golgi, unclear	85.14	85.14
TraesCS7A01G217200.1	Wheat	cytosol	84.77	84.77
TraesCS4A01G427500.1	Wheat	cytosol, unclear	84.59	84.59
TraesCS7A01G062100.1	Wheat	cytosol	84.59	84.59
TraesCS7D01G056800.1	Wheat	cytosol	84.59	84.59
TraesCS1D01G208500.1	Wheat	cytosol	77.25	84.54
TraesCS1A01G205200.1	Wheat	cytosol	84.4	84.4
TraesCS1B01G218800.1	Wheat	cytosol	72.66	83.9
HORVU1Hr1G052730.26	Barley	cytosol	59.63	83.76
TraesCS7D01G218500.2	Wheat	cytosol	84.95	81.09
GSMUA_Achr2P01090_001	Banana	cytosol	51.19	77.29
HORVU7Hr1G044070.2	Barley	cytosol	80.37	76.71
Bra038252.1-P	Field mustard	cytosol	100.0	71.62
CDY11302	Canola	cytosol	10.46	44.53
CDY43747	Canola	cytosol	10.46	44.53
CDY72126	Canola	cytosol	15.96	41.04
CDY72106	Canola	cytosol	15.78	40.57
CDY47913	Canola	cytosol	17.06	35.63
CDX70950	Canola	cytosol	34.13	35.29
CDY01062	Canola	cytosol	32.48	35.12
CDY08491	Canola	cytosol	32.29	34.92
CDY53919	Canola	cytosol	32.66	34.83
CDX92428	Canola	cytosol	33.58	34.72
CDY09085	Canola	cytosol	33.58	34.72
CDY16573	Canola	cytosol	33.58	34.72
CDX73850	Canola	cytosol	32.66	34.7
CDY18509	Canola	cytosol	32.84	33.71
CDY24438	Canola	cytosol, plastid	32.84	33.58
CDX92212	Canola	cytosol, plastid	32.84	33.58
CDX95541	Canola	cytosol, plastid	32.84	33.52
CDY67306	Canola	cytosol	20.73	33.43
CDY03881	Canola	cytosol	31.19	31.78
CDX84951	Canola	cytosol	31.19	31.78
CDY51593	Canola	cytosol	31.19	31.72
CDY54836	Canola	cytosol	31.01	31.59
CDY36138	Canola	cytosol	31.01	31.59
CDY71043	Canola	cytosol	17.61	30.48
CDX74120	Canola	cytosol	29.91	29.37
CDY18835	Canola	cytosol	29.54	29.01
CDY49990	Canola	cytosol	29.72	28.62
CDY21153	Canola	cytosol	27.71	27.76
CDY29973	Canola	cytosol	27.52	27.57
CDX92056	Canola	cytosol	27.71	27.55
CDX74202	Canola	cytosol, plasma membrane	27.71	27.55
CDY50868	Canola	cytosol	27.16	27.21
CDY42892	Canola	cytosol	27.16	27.21
CDY28697	Canola	cytosol	26.24	26.73
CDY51544	Canola	cytosol	26.24	26.73
CDY26490	Canola	cytosol	26.24	26.68
CDX69477	Canola	cytosol	26.24	26.68
CDX78670	Canola	cytosol	25.69	26.17
CDX70671	Canola	cytosol	25.69	26.17
CDX79329	Canola	cytosol	12.29	25.38
CDY50320	Canola	cytosol	12.29	25.38
CDX88835	Canola	mitochondrion	33.76	24.21

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	GO:A0A078HWM8	UniProt:A0A078HWM8
EnsemblPlants:CDY42227	ProteinID:CDY42227	ProteinID:CDY42227.1	InterPro:Chap_CCT_alpha	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00074444001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751
ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF177	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02340	UniParc:UPI0004EE633A	:	:	:

Description

BnaA01g25680DBnaA01g25680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWM8]

Coordinates

chrLK032518:-:256256..259861

Molecular Weight (calculated)

59186.9 Da

IEP (calculated)

6.219

GRAVY (calculated)

-0.061

Length

545 amino acids

Sequence
(BLAST)

001: MSISAQNPDI SGERQSGQDV RTQNVMACQA VSNIVKTSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE ACKYIEEKLV TKVEKLGKVP LINCAKTSMS SKLISGDSDF FANLVVDAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLNGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKEDMR HVAKATGATL VTTFADMEGE ETFDPAHLGT AEEVVEERIA DDDVVLIKGT KTSSAVSLIL RGANDYMLDE MERALHDALC
401: IVKRTLESNT VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFADALLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHYSSMG LDLVNGTIRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKED GQGDE

Best Arabidopsis Sequence Match ( AT3G20050.1 )
(BLAST)

001: MSISAQNPDI SGDRQSGQDV RTQNVMACQA VSNIVKTSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE SCKYIEEKLV TKVEKLGKVP LINCAKTSMS SKLISGDSDF FANLVVEAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLNGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKEDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA DDDVILIKGT KTSSAVSLIL RGANDYMLDE MERALHDALC
401: IVKRTLESNT VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFADALLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHYSSMG LDLVNGTIRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKDE SQGEE

Arabidopsis Description

CCT1T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P28769]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.