CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71043	Canola	cytosol	59.58	99.68
Bra002337.1-P	Field mustard	cytosol	99.62	99.62
CDY16573	Canola	cytosol	99.62	99.62
CDX70950	Canola	cytosol	99.24	99.24
CDY09085	Canola	cytosol	98.48	98.48
CDY72106	Canola	cytosol	39.28	97.64
CDY72126	Canola	cytosol	39.09	97.17
AT5G20890.1	Thale cress	cytosol	96.2	96.2
VIT_18s0001g00480.t01	Wine grape	cytosol	90.89	90.55
GSMUA_Achr2P01800_001	Banana	cytosol	88.8	88.8
Solyc11g069000.1.1	Tomato	extracellular	88.61	88.78
Os03t0619400-01	Rice	plasma membrane	87.67	88.0
PGSC0003DMT400050534	Potato	cytosol	52.75	87.97
Os05t0556700-01	Rice	cytosol, plasma membrane	54.65	87.8
TraesCS4D01G250100.1	Wheat	cytosol	83.11	87.6
TraesCS4B01G250200.1	Wheat	cytosol	83.11	87.6
EES00491	Sorghum	cytosol	86.91	87.24
EES00273	Sorghum	cytosol	84.25	87.06
TraesCS4A01G054800.1	Wheat	cytosol, unclear	86.72	87.05
PGSC0003DMT400033155	Potato	cytosol	58.25	86.97
Zm00001d040257_P001	Maize	cytosol	86.53	86.86
TraesCS5A01G342600.1	Wheat	cytosol	86.72	86.55
TraesCS5D01G347400.1	Wheat	cytosol	86.72	86.55
TraesCS5B01G341900.1	Wheat	cytosol	86.53	85.88
Zm00001d008369_P001	Maize	cytosol, nucleus	85.2	85.52
HORVU5Hr1G085530.1	Barley	mitochondrion	86.34	82.88
HORVU4Hr1G068820.1	Barley	cytosol	86.53	81.43
GSMUA_Achr3P24440_001	Banana	peroxisome	83.3	79.82
Zm00001d040688_P001	Maize	cytosol	39.28	73.67
TraesCS3B01G595300.1	Wheat	cytosol	18.6	72.59
CDX88835	Canola	mitochondrion	99.05	68.68
CDY43747	Canola	cytosol	11.01	45.31
CDY11302	Canola	cytosol	11.01	45.31
Zm00001d052882_P001	Maize	plastid	38.71	40.24
CDY47913	Canola	cytosol	18.98	38.31
CDY67306	Canola	cytosol	22.96	35.8
CDY01062	Canola	cytosol	33.59	35.12
CDY08491	Canola	cytosol	33.21	34.72
CDX73850	Canola	cytosol	33.59	34.5
CDY53919	Canola	cytosol	33.21	34.25
CDY36063	Canola	cytosol	34.91	33.76
CDX82264	Canola	cytosol	34.91	33.76
CDY42227	Canola	cytosol	34.72	33.58
CDY24438	Canola	cytosol, plastid	33.78	33.4
CDY24564	Canola	cytosol	34.54	33.39
CDX95541	Canola	cytosol, plastid	33.78	33.33
CDY25374	Canola	cytosol	34.35	33.21
CDX92212	Canola	cytosol, plastid	33.59	33.21
CDY18509	Canola	cytosol	33.4	33.15
CDY33444	Canola	cytosol	34.72	32.5
CDX84951	Canola	cytosol	31.88	31.4
CDY03881	Canola	cytosol	31.88	31.4
CDY51593	Canola	cytosol	31.88	31.34
CDY36138	Canola	cytosol	31.69	31.21
CDY54836	Canola	cytosol	31.5	31.03
CDX74120	Canola	cytosol	29.22	27.75
CDY18835	Canola	cytosol	29.03	27.57
CDY49990	Canola	cytosol	29.22	27.21
CDY28697	Canola	cytosol	27.32	26.92
CDY51544	Canola	cytosol	27.32	26.92
CDY26490	Canola	cytosol	27.32	26.87
CDX70671	Canola	cytosol	27.13	26.73
CDX78670	Canola	cytosol	27.13	26.73
CDX69477	Canola	cytosol	27.13	26.68
CDY42892	Canola	cytosol	26.19	25.37
CDY50868	Canola	cytosol	26.19	25.37
CDX92056	Canola	cytosol	26.0	25.0
CDX74202	Canola	cytosol, plasma membrane	25.81	24.82
CDY21153	Canola	cytosol	25.62	24.82
CDY29973	Canola	cytosol	25.62	24.82
CDX79329	Canola	cytosol	11.39	22.73
CDY50320	Canola	cytosol	11.2	22.35

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.2	Gene3D:3.30.260.10	Gene3D:3.50.7.10	GO:A0A078DYQ7	EnsemblPlants:CDX92428
ProteinID:CDX92428	ProteinID:CDX92428.1	InterPro:Chap_CCT_beta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00154192001	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750
ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF23	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02341	UniParc:UPI0004EE24A9	:	:

Description

BnaA10g14670D

Coordinates

chrLK031872:+:609649..612752

Molecular Weight (calculated)

57329.4 Da

IEP (calculated)

5.547

GRAVY (calculated)

-0.098

Length

527 amino acids

Sequence
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFIGAMAI ADLVKSTLGP KGMDKILQSS GRGHSVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVTSKIHPMT IIAGYRMAAE CARDALLKRV IDNKENAEKF RSDLMKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLRDSFLD EGFILDKKIG IGQPKRIENA KILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVNKILAH GINCFVNRQL IYNFPEELFA
301: DAGVLAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGV EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDSR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHNEGCN AGIDVISGAV GDMEERGIYE AFKVKQAVLL
501: SATEAAEMIL RVDEIITCAP RRREDRM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.