CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70950	Canola	cytosol	68.95	99.43
CDY16573	Canola	cytosol	68.68	99.05
CDX92428	Canola	cytosol	68.68	99.05
CDY71043	Canola	cytosol	41.05	99.05
CDY09085	Canola	cytosol	68.16	98.29
CDY72126	Canola	cytosol	27.24	97.64
CDY72106	Canola	cytosol	27.11	97.17
AT5G20890.1	Thale cress	cytosol	66.58	96.02
Bra006584.1-P	Field mustard	cytosol	92.89	94.39
VIT_18s0001g00480.t01	Wine grape	cytosol	63.03	90.55
Solyc11g069000.1.1	Tomato	extracellular	61.32	88.59
GSMUA_Achr2P01800_001	Banana	cytosol	61.32	88.42
PGSC0003DMT400050534	Potato	cytosol	36.58	87.97
Os03t0619400-01	Rice	plasma membrane	60.66	87.81
TraesCS4D01G250100.1	Wheat	cytosol	57.63	87.6
TraesCS4B01G250200.1	Wheat	cytosol	57.63	87.6
Os05t0556700-01	Rice	cytosol, plasma membrane	37.76	87.5
EES00491	Sorghum	cytosol	60.26	87.24
EES00273	Sorghum	cytosol	58.42	87.06
TraesCS4A01G054800.1	Wheat	cytosol, unclear	60.13	87.05
PGSC0003DMT400033155	Potato	cytosol	40.39	86.97
Zm00001d040257_P001	Maize	cytosol	60.0	86.86
TraesCS5D01G347400.1	Wheat	cytosol	60.0	86.36
TraesCS5A01G342600.1	Wheat	cytosol	60.0	86.36
TraesCS5B01G341900.1	Wheat	cytosol	59.87	85.69
Zm00001d008369_P001	Maize	cytosol, nucleus	59.08	85.52
HORVU5Hr1G085530.1	Barley	mitochondrion	60.66	83.97
HORVU4Hr1G068820.1	Barley	cytosol	60.79	82.5
GSMUA_Achr3P24440_001	Banana	peroxisome	58.29	80.55
Zm00001d040688_P001	Maize	cytosol	27.24	73.67
TraesCS3B01G595300.1	Wheat	cytosol	13.03	73.33
CDY43747	Canola	cytosol	7.63	45.31
CDY11302	Canola	cytosol	7.63	45.31
Zm00001d052882_P001	Maize	plastid	26.71	40.04
CDY47913	Canola	cytosol	13.16	38.31
CDY67306	Canola	cytosol	15.92	35.8
CDY01062	Canola	cytosol	23.29	35.12
CDY08491	Canola	cytosol	23.03	34.72
CDX73850	Canola	cytosol	23.29	34.5
CDY53919	Canola	cytosol	23.03	34.25
CDY42227	Canola	cytosol	24.21	33.76
CDY36063	Canola	cytosol	24.08	33.58
CDY24564	Canola	cytosol	24.08	33.58
CDX82264	Canola	cytosol	24.08	33.58
CDY24438	Canola	cytosol, plastid	23.42	33.4
CDY25374	Canola	cytosol	23.95	33.39
CDX95541	Canola	cytosol, plastid	23.42	33.33
CDX92212	Canola	cytosol, plastid	23.29	33.21
CDY18509	Canola	cytosol	23.16	33.15
CDY33444	Canola	cytosol	24.21	32.68
CDX84951	Canola	cytosol	22.11	31.4
CDY03881	Canola	cytosol	22.11	31.4
CDY51593	Canola	cytosol	22.11	31.34
CDY36138	Canola	cytosol	21.97	31.21
CDY54836	Canola	cytosol	21.84	31.03
CDX74120	Canola	cytosol	20.26	27.75
CDY18835	Canola	cytosol	20.13	27.57
CDY49990	Canola	cytosol	20.26	27.21
CDY28697	Canola	cytosol	18.82	26.73
CDY51544	Canola	cytosol	18.82	26.73
CDY26490	Canola	cytosol	18.82	26.68
CDX70671	Canola	cytosol	18.68	26.54
CDX78670	Canola	cytosol	18.68	26.54
CDX69477	Canola	cytosol	18.68	26.49
CDY42892	Canola	cytosol	18.16	25.37
CDY50868	Canola	cytosol	18.16	25.37
CDX92056	Canola	cytosol	17.89	24.82
CDY21153	Canola	cytosol	17.76	24.82
CDY29973	Canola	cytosol	17.76	24.82
CDX74202	Canola	cytosol, plasma membrane	17.76	24.64
CDX79329	Canola	cytosol	7.89	22.73
CDY50320	Canola	cytosol	7.76	22.35

Protein Annotations

Gene3D:1.10.560.10	MapMan:1.2.1.2.2	MapMan:19.1.7.2	Gene3D:2.30.33.40	MapMan:20.3.1.2	Gene3D:3.30.260.10
Gene3D:3.50.7.10	GO:A0A078DHY1	EnsemblPlants:CDX88835	ProteinID:CDX88835	ProteinID:CDX88835.1	InterPro:Chap_CCT_beta
InterPro:Chaperone_TCP-1	InterPro:Chaperonin_GroES	InterPro:Chaperonin_GroES_sf	InterPro:Chaperonin_TCP-1_CS	InterPro:Chaprnonin_Cpn10_CS	ncoils:Coil
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00148910001	InterPro:GroEL-like_apical_dom_sf	InterPro:GroES-like_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	InterPro:IPR037124	PFAM:PF00118	PFAM:PF00166
PRINTS:PR00304	ScanProsite:PS00681	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353
PANTHER:PTHR11353:SF23	SMART:SM00883	SUPFAM:SSF48592	SUPFAM:SSF50129	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02341	UniParc:UPI0004EE37F6	SEG:seg	:	:

Description

BnaA03g08140D

Coordinates

chrLK031856:+:1138768..1153632

Molecular Weight (calculated)

83550.1 Da

IEP (calculated)

5.375

GRAVY (calculated)

-0.170

Length

760 amino acids

Sequence
(BLAST)

001: MMAFRKKQFR NLRYKFSLKI NCINDAFNFI LIHLEAQVMW QILIGHVTSQ IIYSKYAGTE VEFNGEKHLI LKEDDIVGLL ETEDIKDLKP LNDRVFIKVA
101: EAEEKTAGGL LLTETTKEKP SIGTVIAVGP GTLDEEGKVQ PLSISIGSTV LILEDGGPPR APPASKEVVE KLPVIVFSEE MLKTLGADVE CCIRKENLDE
201: HNSCPICRHA LPTDDQKYES WKEREKEAEE ERKGKIDKIF KDDASEEKGE RARMASFIGA MAVADLVKST LGPKGMDKIL QSTGRGHSVT VTNDGATILK
301: SLHIDNPAAK VLVDISKVQD DEVGDGTTSV VVLAGELLRE AEKLVTSKIH PMTIIAGYRM AAECARDALL KRVIDNKENA EKFRSDLMKI AMTTLCSKIL
401: SQDKEHFAEM AVDAVFRLKG STNLEAIQII KKPGGSLRDS FLDEGFILDK KIGIGQPKRI ENAKILVANT AMDTDKVKIY GARVRVDSMT KVAQIEGAEK
501: EKMKDKVNKI LAHGINCFVN RQLIYNFPEE LFADAGVLAI EHADFEGIER LGLVTGGEIA STFDNPESVK LGHCKLIEEI MIGEDKLIHF SGVEMGQACS
601: IVLRGASHHV LDEAERSLHD ALCVLSQTVN DSRVLLGGGW PEMVMAKEVD ELARKTAGKK SHAIEAFSRA LVAIPTTIAD NAGLDSAELV AQLRAEHHTE
701: GCNAGIDVIS GAVGDMEERG IYEAFKVKQA VLLSATEAAE MILRVDEIIT CAPRRREDRM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.