Factsheet for Zm00001d008369_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040257_P001	Maize	cytosol	96.76	96.76
EES00273	Sorghum	cytosol	93.52	96.27
EES00491	Sorghum	cytosol	96.19	96.19
Os03t0619400-01	Rice	plasma membrane	93.14	93.14
TraesCS4D01G250100.1	Wheat	cytosol	87.81	92.2
TraesCS4A01G054800.1	Wheat	cytosol, unclear	92.19	92.19
TraesCS4B01G250200.1	Wheat	cytosol	87.62	92.0
TraesCS5A01G342600.1	Wheat	cytosol	92.38	91.86
TraesCS5D01G347400.1	Wheat	cytosol	92.38	91.86
TraesCS5B01G341900.1	Wheat	cytosol	92.57	91.53
HORVU5Hr1G085530.1	Barley	mitochondrion	92.57	88.52
GSMUA_Achr2P01800_001	Banana	cytosol	88.19	87.86
CDY71043	Canola	cytosol	52.38	87.3
VIT_18s0001g00480.t01	Wine grape	cytosol	87.62	86.96
Bra020134.1-P	Field mustard	cytosol	83.81	86.78
HORVU4Hr1G068820.1	Barley	cytosol	92.19	86.43
KRH25193	Soybean	nucleus	86.67	86.34
KRH30467	Soybean	nucleus	86.29	85.96
Solyc11g069000.1.1	Tomato	extracellular	86.1	85.93
AT5G20890.1	Thale cress	cytosol	86.1	85.77
Bra002337.1-P	Field mustard	cytosol	85.71	85.39
CDY16573	Canola	cytosol	85.71	85.39
CDY09085	Canola	cytosol	85.71	85.39
CDX70950	Canola	cytosol	85.71	85.39
CDX92428	Canola	cytosol	85.52	85.2
CDY72106	Canola	cytosol	33.71	83.49
CDY72126	Canola	cytosol	33.52	83.02
Zm00001d040688_P001	Maize	cytosol	43.43	81.14
GSMUA_Achr3P24440_001	Banana	peroxisome	84.19	80.36
Bra006584.1-P	Field mustard	cytosol	85.52	60.03
CDX88835	Canola	mitochondrion	85.52	59.08
PGSC0003DMT400019727	Potato	cytosol	15.05	56.83
Zm00001d052882_P001	Maize	plastid	41.14	42.6
Zm00001d018349_P001	Maize	cytosol	35.81	34.5
Zm00001d052056_P005	Maize	plasma membrane	35.62	34.31
Zm00001d053857_P002	Maize	cytosol	36.0	33.75
Zm00001d007960_P001	Maize	cytosol	34.67	33.21
Zm00001d018694_P002	Maize	cytosol	34.29	32.85
Zm00001d051742_P001	Maize	plastid	32.95	32.34
Zm00001d027371_P001	Maize	plasma membrane	32.19	31.59
Zm00001d007192_P001	Maize	cytosol	29.52	28.76
Zm00001d028183_P002	Maize	cytosol	29.14	27.42
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	27.24	26.09
Zm00001d007508_P005	Maize	cytosol	26.86	24.61
Zm00001d053553_P002	Maize	cytosol	28.95	23.31

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:103634709	MapMan:20.3.1.2	Gene3D:3.30.260.10	Gene3D:3.50.7.10	ProteinID:AQK89670.1
ProteinID:AQK89675.1	InterPro:Chap_CCT_beta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:K7UPD0
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353
PANTHER:PTHR11353:SF23	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02341
UniParc:UPI000220BA82	EnsemblPlantsGene:Zm00001d008369	EnsemblPlants:Zm00001d008369_P001	EnsemblPlants:Zm00001d008369_T001	SEG:seg	:

Description

Putative TCP-1/cpn60 chaperonin family protein

Coordinates

chr8:-:6538825..6549503

Molecular Weight (calculated)

57376.5 Da

IEP (calculated)

5.427

GRAVY (calculated)

-0.116

Length

525 amino acids

Sequence
(BLAST)

001: MERVLKDDAV EEKGDRARMA SFVGAMAISD LAKTTLGPKG MDKILQSTGR GRNVTVTNDG ATILKSLHID NPAAKVLVDI SKVQDDEVGD GTTSVVVLAG
101: ELLKEAEKLI NMKIHPMTII AGYRMALECA RNALLQNTMD NKENTDKFRA DLMNIAMTTL SSKILSQDKE YFAELAVDAV LRLKGSTNLE SIQILKKPGG
201: SLKDSFLDEG FILDKKIGIG QPKRIENAKI LVANTAMDTD KVKIYGAQVR VDSMSKVADI EAAEKQKMRE KVQKIIAHGI NCFINRQLIY NFPEELFADA
301: GILAIEHADF EGIERLALVT GGEIASTFDN PDSVKLGHCK VIEEIMIGED RLIHFSGVAM GQACTIVLRG ASEHVLDEAE RSLHDALCVL SQTVNDTRVL
401: FGGGWPEMLM AKEVDELARK TPGKRSHAID AFSHALQAIP TIIADNAGLD SAELISQLRA EHHKENCTAG IDVITGTVGD MQRLGIQESF KVKQAILLSA
501: TEAAEMILRV DEIISCAPRR REDRM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.