Factsheet for Zm00001d052948_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007192_P001
Zm00001d007960_P001
Zm00001d018694_P002
Zm00001d053857_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03960.1	Zm00001d007960_P001	AT1G24510.1	21798944
AT3G03960.1	Zm00001d018694_P002	AT1G24510.1	21798944
AT3G03960.1	Zm00001d053857_P002	AT3G11830.1	21798944
AT3G03960.1	Zm00001d007192_P001	AT5G16070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09994	Sorghum	cytosol	97.63	97.63
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	94.16	94.51
Zm00001d007508_P005	Maize	cytosol	96.9	92.67
HORVU4Hr1G040660.1	Barley	cytosol	90.33	91.67
TraesCS4B01G165400.1	Wheat	cytosol	89.96	91.3
TraesCS4A01G164900.2	Wheat	cytosol	89.96	90.62
TraesCS4D01G157300.1	Wheat	cytosol	88.5	90.32
GSMUA_Achr8P04580_001	Banana	cytosol	87.04	87.68
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	86.68	87.16
GSMUA_Achr3P25570_001	Banana	cytosol	86.31	86.95
PGSC0003DMT400017609	Potato	cytosol	85.58	86.69
Solyc01g088080.2.1	Tomato	nucleus	85.58	86.69
KRH70153	Soybean	nucleus	86.13	86.61
VIT_08s0007g07460.t01	Wine grape	cytosol	85.95	86.42
TraesCS6B01G010900.1	Wheat	mitochondrion, plastid	82.66	85.31
TraesCS6D01G008000.1	Wheat	cytosol	85.95	82.63
Bra036422.1-P	Field mustard	cytosol	81.39	81.99
CDY29973	Canola	cytosol	81.02	81.62
CDY21153	Canola	cytosol	80.84	81.43
CDX92056	Canola	cytosol	81.2	81.2
Bra001094.1-P	Field mustard	cytosol	80.66	80.66
CDX74202	Canola	cytosol, plasma membrane	80.66	80.66
AT3G03960.1	Thale cress	cytosol	80.66	80.51
Bra031959.1-P	Field mustard	cytosol	79.74	80.33
CDY42892	Canola	cytosol	79.56	80.15
CDY50868	Canola	cytosol	79.56	80.15
CDY50320	Canola	cytosol	36.5	75.76
CDX79329	Canola	cytosol	35.77	74.24
Zm00001d018349_P001	Maize	cytosol	27.37	27.52
Zm00001d008369_P001	Maize	cytosol, nucleus	26.09	27.24
Zm00001d040257_P001	Maize	cytosol	26.09	27.24
Zm00001d052056_P005	Maize	plasma membrane	27.01	27.16
Zm00001d028183_P002	Maize	cytosol	27.37	26.88
Zm00001d051742_P001	Maize	plastid	26.09	26.73
Zm00001d027371_P001	Maize	plasma membrane	25.55	26.17
Zm00001d053857_P002	Maize	cytosol	25.91	25.36
Zm00001d007192_P001	Maize	cytosol	24.27	24.68
Zm00001d007960_P001	Maize	cytosol	24.09	24.09
Zm00001d018694_P002	Maize	cytosol	24.09	24.09
Zm00001d053553_P002	Maize	cytosol	27.19	22.85
Zm00001d040688_P001	Maize	cytosol	9.67	18.86
Zm00001d052882_P001	Maize	plastid	12.04	13.02

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:103654524	MapMan:20.3.1.8	Gene3D:3.50.7.10	ProteinID:AQK58420.1	InterPro:Chap_CCT_theta
InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:K7UCH1	PFAM:PF00118
PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	PANTHER:PTHR11353	PANTHER:PTHR11353:SF78	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02346	UniParc:UPI0002211B04	EnsemblPlantsGene:Zm00001d052948
EnsemblPlants:Zm00001d052948_P001	EnsemblPlants:Zm00001d052948_T001	:	:	:	:

Description

Putative TCP-1/cpn60 chaperonin family protein

Coordinates

chr4:-:205895319..205899917

Molecular Weight (calculated)

58910.0 Da

IEP (calculated)

5.083

GRAVY (calculated)

-0.047

Length

548 amino acids

Sequence
(BLAST)

001: MVGLGSMAGY GIQSMLKEGH RHLSGLEEAV LKNIDACREL SAITRTSLGP NGMNKMVINH LDKLFVTNDA ATIVNELEVQ HPAAKILVLA AKAQQEEIGD
101: GANLTISFAG ELLEKAEELI RMGLHPSEII IGYTKAINKT IEILEDLVEK GSENMDVRNK EDVVLRMRSA VASKQFGQED MLCPLVADAC IQVCPKNPAN
201: FNVDNVRVAK LLGGGLHNSS VVRGMVLKND AVGSIKRAEK AKIVVFAGGV DTSATETKGT VLIHSAEQLE NYAKTEEAKV EELIKAVADS GAKVIVSGAA
301: VGDMALHFCE RYKLMVLKIS SKFELRRFCR TTGAVAILKL SQPNADELGY ADSVSVEEIG GTRVTVVKNE DGGNSVATVV LRGSTDSILD DLERAVDDGV
401: NTYRSMCRDS RIIPGAAATE VELAKRLKEF SLKETGLDQY AIAKFAESFE MVPRTLAENA GLSAMEIISS LYAEHASGNA KVGIDLEEGA CKDISTLKIW
501: DLYVTKFFAL KYSADAACTV LRVDQIIMAK PAGGPRRDAQ PGGGMDED

Best Arabidopsis Sequence Match ( AT3G03960.1 )
(BLAST)

001: MVGMSMQPYG IQSMLKEGYR HLSGLDEAVI KNIEACKELS TITRTSLGPN GMNKMVINHL DKLFVTNDAA TIVNELEIQH PAAKLLVLAA KAQQEEIGDG
101: ANLTISFAGE LLQNAEELIR MGLHPSEIIS GYTKAVSKAV EILEQLVETG SETMDVRNKD EVISRMRAAV ASKQFGQEEI ICSLVTDACI QVCPKNPTNF
201: NVDNVRVSKL LGGGLHNSCI VRGMVLKSDA VGSIKRMEKA KVAVFAGGVD TTATETKGTV LIHSAEQLEN YAKTEEAKVE ELIKAVAESG AKVIVSGGSI
301: GEMALHFCER YKIMVLKISS KFELRRFCRT AGAVAHLKLS RPSPEDLGYV DSISVEEIGG VTVTIARNEE GGNSISTVVL RGSTDSILDD LERAVDDGVN
401: TYKAMCRDSR IVPGAAATEI ELAQRLKEYA NAEIGLDKYA ITKYAESFEF VPKTLADNAG LNAMEIIAAL YTGHGSGNTK LGIDLEEGAC KDVSETKVWD
501: LFATKLFALK YASDAACTVL RVDQIIMAKP AGGPRRDAAQ AAGAGAEED

Arabidopsis Description

CCT8T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q94K05]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.