Factsheet for TraesCS6D01G008000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G213800.1
TraesCS1B01G227600.1
TraesCS1D01G216600.1
TraesCS6A01G131400.1
TraesCS6A01G399300.1
TraesCS6B01G159800.1
TraesCS6D01G121300.1
TraesCS6D01G383500.1
TraesCS7A01G358400.1
TraesCS7B01G269300.2
TraesCS7D01G364400.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03960.1	TraesCS1A01G213800.1	AT1G24510.1	21798944
AT3G03960.1	TraesCS1B01G227600.1	AT1G24510.1	21798944
AT3G03960.1	TraesCS1D01G216600.1	AT1G24510.1	21798944
AT3G03960.1	TraesCS7A01G358400.1	AT1G24510.1	21798944
AT3G03960.1	TraesCS7B01G269300.2	AT1G24510.1	21798944
AT3G03960.1	TraesCS7D01G364400.2	AT1G24510.1	21798944
AT3G03960.1	TraesCS6A01G131400.1	AT3G11830.1	21798944
AT3G03960.1	TraesCS6B01G159800.1	AT3G11830.1	21798944
AT3G03960.1	TraesCS6D01G121300.1	AT3G11830.1	21798944
AT3G03960.1	TraesCS6A01G399300.1	AT5G16070.1	21798944
AT3G03960.1	TraesCS6D01G383500.1	AT5G16070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G157300.1	Wheat	cytosol	85.79	91.06
TraesCS6B01G010900.1	Wheat	mitochondrion, plastid	84.74	90.96
HORVU4Hr1G040660.1	Barley	cytosol	86.14	90.93
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	83.16	86.81
EES09994	Sorghum	cytosol	82.98	86.31
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	82.63	85.95
GSMUA_Achr8P04580_001	Banana	cytosol	78.07	81.8
Zm00001d007508_P005	Maize	cytosol	81.75	81.33
VIT_08s0007g07460.t01	Wine grape	cytosol	77.02	80.55
GSMUA_Achr3P25570_001	Banana	cytosol	76.84	80.51
Solyc01g088080.2.1	Tomato	nucleus	75.96	80.04
PGSC0003DMT400017609	Potato	cytosol	75.79	79.85
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	76.14	79.63
KRH70153	Soybean	nucleus	75.61	79.08
Bra036422.1-P	Field mustard	cytosol	71.4	74.82
CDY29973	Canola	cytosol	71.23	74.63
CDY21153	Canola	cytosol	70.88	74.26
CDX92056	Canola	cytosol	71.23	74.09
CDY42892	Canola	cytosol	70.7	74.08
AT3G03960.1	Thale cress	cytosol	71.05	73.77
CDX74202	Canola	cytosol, plasma membrane	70.88	73.72
Bra001094.1-P	Field mustard	cytosol	70.88	73.72
Bra031959.1-P	Field mustard	cytosol	70.18	73.53
CDY50868	Canola	cytosol	70.0	73.35
CDY50320	Canola	cytosol	31.58	68.18
CDX79329	Canola	cytosol	30.7	66.29
TraesCS1D01G208500.1	Wheat	cytosol	23.68	27.11
TraesCS7D01G332900.1	Wheat	cytosol	26.14	26.37
TraesCS7D01G056800.1	Wheat	cytosol	25.09	26.24
TraesCS7D01G218500.2	Wheat	cytosol	25.09	25.04
TraesCS4D01G250100.1	Wheat	cytosol	21.75	24.8
TraesCS5D01G347400.1	Wheat	cytosol	22.81	24.62
TraesCS7D01G164400.1	Wheat	cytosol	22.98	24.53
TraesCS7D01G364400.2	Wheat	cytosol	21.93	23.36
TraesCS6D01G383500.1	Wheat	unclear	21.75	23.18
TraesCS1D01G216600.1	Wheat	cytosol	21.75	23.18
TraesCS6D01G121300.1	Wheat	cytosol	22.28	22.8

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.8	Gene3D:3.50.7.10	InterPro:Chap_CCT_theta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304
ScanProsite:PS00750	ScanProsite:PS00751	PANTHER:PTHR11353	PANTHER:PTHR11353:SF78	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02346	EnsemblPlantsGene:TraesCS6D01G008000	EnsemblPlants:TraesCS6D01G008000.1	TIGR:cd03341

Description

No Description!

Coordinates

chr6D:+:3272765..3277194

Molecular Weight (calculated)

61054.8 Da

IEP (calculated)

6.306

GRAVY (calculated)

-0.026

Length

570 amino acids

Sequence
(BLAST)

001: MVSLGANPGG HRIQSILKDG HKHLSGLDEA VLQNIGAGRE LSAITRTSLG PNGMNKMVIN HLDKQFITKD AATIVNELEV QHPAAKLLVL AARAQQEETG
101: DGANLTISFA GELLGKAEEL IRMGLHPSEI ITGYTKAINK TLGILEDLVE KGSENMDVRN KEEVVLRMKS AVASKIFGQE DLLCPLIADA CIQVCPENPV
201: NFNVDNVRVA KLVGGSLHNS SVVRGMVLKN DAVGSITKVK NVMVAVFAGG VDTSATETKG TVLIHSAEQL ENYAKTEEAK VEELIKSVAD SGAKVIVSGA
301: AVGDMALHFC ERYKLMVLKV SSKFELRRLC RTTGAVALLK LSWPNAGELG YADSVSVEEI GGAPVTVVQN EGGGNSVATF VLRGSTDSIL DDLERAVDDG
401: VNTYKCMCRD SRIIPGDAAT EVELAKKLKQ FSLKETGLDQ YAIAKFGESF EMVPRTLSEN AGLGAMEIIS SLYAEHAAGN VKVGIDLKEG ACKDASIMKI
501: WDLYITKSFA LKYSADVVCT VLRVDQIIMA KPAGGPRPPK QGGMDTTRKR TINNIDINGA PHMWCATTIY

Best Arabidopsis Sequence Match ( AT3G03960.1 )
(BLAST)

001: MVGMSMQPYG IQSMLKEGYR HLSGLDEAVI KNIEACKELS TITRTSLGPN GMNKMVINHL DKLFVTNDAA TIVNELEIQH PAAKLLVLAA KAQQEEIGDG
101: ANLTISFAGE LLQNAEELIR MGLHPSEIIS GYTKAVSKAV EILEQLVETG SETMDVRNKD EVISRMRAAV ASKQFGQEEI ICSLVTDACI QVCPKNPTNF
201: NVDNVRVSKL LGGGLHNSCI VRGMVLKSDA VGSIKRMEKA KVAVFAGGVD TTATETKGTV LIHSAEQLEN YAKTEEAKVE ELIKAVAESG AKVIVSGGSI
301: GEMALHFCER YKIMVLKISS KFELRRFCRT AGAVAHLKLS RPSPEDLGYV DSISVEEIGG VTVTIARNEE GGNSISTVVL RGSTDSILDD LERAVDDGVN
401: TYKAMCRDSR IVPGAAATEI ELAQRLKEYA NAEIGLDKYA ITKYAESFEF VPKTLADNAG LNAMEIIAAL YTGHGSGNTK LGIDLEEGAC KDVSETKVWD
501: LFATKLFALK YASDAACTVL RVDQIIMAKP AGGPRRDAAQ AAGAGAEED

Arabidopsis Description

CCT8T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q94K05]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.